G12396


Basic Information

Item Value
gene id G12396
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13585704 ~ 13585903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14659
GTCTTTTCCCAGGTAACGAAAGGTTAAAGAGTGACTGAACACGTCGATTGGaacatgtgtttttctgttgctcattagGAAAAACTATATTTCGGTCTTGGAGGGGTGTTTCCTGACCGATTCTGGGTTTGGTTAATTatgtttgtcccccatgagacacTTTAAATAACAACCAGAGGTAATGGTGAatgtagaatgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14659 True 200 lncRNA 0.36 1 13585704 13585903

Neighbor

gene id symbol gene type direction distance location
pdzk1ip1 LOC106574040 coding upstream 144176 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 154587 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 174414 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 290252 13238613 ~ 13295452 (+)
LOC110526761 LOC106574030 coding upstream 361801 13214771 ~ 13223903 (+)
tm2d1 LOC106574044 coding downstream 148860 13734763 ~ 13753675 (+)
LOC110508285 LOC106574085 coding downstream 554593 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 576482 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 586616 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 606564 14192456 ~ 14214939 (+)
G12390 NA non-coding upstream 4394 13581105 ~ 13581310 (+)
G12371 NA non-coding upstream 26126 13559335 ~ 13559578 (+)
G12368 NA non-coding upstream 28097 13557369 ~ 13557607 (+)
G12367 NA non-coding upstream 28568 13556927 ~ 13557136 (+)
G12364 NA non-coding upstream 30549 13554365 ~ 13555155 (+)
G12410 NA non-coding downstream 31156 13617059 ~ 13666871 (+)
G12411 NA non-coding downstream 31842 13617745 ~ 13669028 (+)
G12412 NA non-coding downstream 43850 13629753 ~ 13665236 (+)
G12497 NA non-coding downstream 189630 13775533 ~ 13775871 (+)
G12499 NA non-coding downstream 193704 13779607 ~ 13788862 (+)
LOC110523899 LOC106574090 other upstream 2071322 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3424418 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3594162 9980527 ~ 9991542 (+)
LOC118966784 LOC106574127 other upstream 4125751 9450932 ~ 9460358 (+)
G13380 NA other downstream 1093447 14679350 ~ 14679578 (+)
G13381 NA other downstream 1093795 14679698 ~ 14680027 (+)
G13391 NA other downstream 1114273 14700176 ~ 14700730 (+)

Expression


Co-expression Network