XLOC_019948 (BX322657.3)


Basic Information

Item Value
gene id XLOC_019948
gene name BX322657.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1384104 ~ 1407856 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039788
atgagtgatccagaaccctgcagaattaaagaGGAAGAGACGGAAGAACAAATAGACCTGATAATGGAGAACGAGGAGAAACTTCACCATGTCAAGAAATGTTTGACCTGCACTGAGTGTGGAAAGACATTTGCATCCAAACGGAATCTCAAGGTTCAtacgaggatccacactggagagaaaccattcggatgcactcagtgtgggaagagtttcagacagtcatcatcccttaatcaacacatgctgatccacaccggagagaaaacACAGAAGTGTGAACAATGcggcaaaacatttttgaggaCTTCAGAGCTGAAGAGCCATCTTAGCGTTCATACAAACGAGAAGCCTTACTCGTGTTCGGAGTGTGGAAAAATCTTTACACACCAAAACCTTCTAAGAAAACATCAGAAGattcacactggtgtgagagagtttgtgtgctttgagtgtgagaagagttttatTAGAATTGCAGACCTGAAAcagcaccagaggattcacactggagagaaaccgtacaagtgttcacactgcgaccaGAGATTCATTCAGTTAGGGCATCTGAAAGCGcacgagaggattcacactggagagaaaccgtacaagtgttcacactgcgacaacaGATTCGTTCAGTCAGGAGACCTGAAAAGACATGAGatgattcacaccggagagaaaccttacaagtgttcacactgcgacaacaGATTCAGTCAGTCCGCAGATCTGAAAAGACacaagaggattcacactggagagaaaccgtacaagtgttcacactgtgacaaaaCGTTTCGTCAGTTAGGAAACCTGAAAAGACATGATAGGACTCACTCTGGAGAGATATCAAACTTGGTTGGCATTACTGAAAACACCTGTGTACCTGTGTATGTCGTGGGGGAAAACAATCTATTAGAGTGAATGTGCATATAGACTTTGTTAGCTGCTTGATCTTGATTCTCtgtaattattatgattaatttgAACTTGTTTCAATGCTAAAAGCTGCTGTTTGATGttttacaccaggggtcaccaaacttgttcctggagggtcggtgtcctgcagatttaagctccaaccctaatcaaacacacctgaacaagctaatcaaggtcttactaggtatacttgaaacatccaggcaggtgtgtttaggtAAGtaagagctaaaccctgcagggacaccggccctccaggaccgagattggtgacttCTGTTTTACACCatcaatcaatttaaaaaacCCAATCATAACTTTTATATACGGTCAAATATACATATGCCTCCTGGTTGGATGAACACTCACAGCACTTTGCATTGTAAAACACAGCATATAAGCACTTTCAAGATAGCCCTTTATTTATCCTTTTATGGTGTAGTGTCAGTTACATttggcatacctgccaacactcccgtttttcctgagAGTCTTCCCTATTTtagacccatctcccaccaccctccagttttgttatttctcccggaaaactcccgtaatttcaagCTCCTTCAGTCCTCAgcattttggtacagtctgtgaaACTCCCGGGTCGCCAACTTTGGTGTAGGATCCGATTGCAGCGGCCGCCCAAAACACGGTTCATTGTACAATTAGTAACACCACAGTACATGTAACCCCGCTGTtcttacaccacccaacccgctccaaactgggatcgaaccggcgaccttccacatgggagtcggttgctctaccaaggagtctaaagaccatggcctctagcatctgtcgctagaccACCttgctttagaggtcagaggagtggggtgtacctgcacagcacttactagctgaccTCCGTtgcactcacccccctaaacttcacccccatccgggtcacggcaccaatgtaaccccgccggtcctacaccacccaaccagCGTCAAGCTGgtattgaaccagcgaccttccgcatgggagtcggttgctctaccaaggagtaGAGCAACCATGGTAGACCATGCCCTCTAGCGTCTGtctctagagcacctttagaggtcagaggagtgaggtttacctgtttACTCTGTTACACTCAAcccccttaaacctcactcccatcctgggtttggcaccaatgtaaccccgccggtcctacaccacccaacccgctccaaaaTGCAAAGTTTCTGTCCATCTTGGATGAAGTCCTATACATTAATAGTCTTTTCTGAaacttcctttaacaaacggccgacgaATCCTCtattgtaagcgtgtagattgctaAAGCACTGGTGAGAAATAAgacgggaacacagcacaaggctggggctataatgctgagctatttttgcaaaaataaacttcaaccactgactcttcacagcctcttGTTGACTATTTTATAGATGAATTAATAggtttaaacacggtgcactttcagatataagccttagctggatatttcactttatttagagCTGTATTACACACTGTACGGAAGGTCATTTTCAGTAACccataacaggggctctttaactTCAAATTTGACAGTGCTTCGGCAGATTAACCAACCCACCTCACTCAATTACAAGGCATTTTAAAATCCTGTCTAATGGTTGAAAAGAAATGAGCCAGCACAGTCACTAAGAGGCTCTAATAGCTGTCTATCAAAATGTGGAGTGGATGATTTCCTGTGTTCCCTGAATTTAAATAACATGTTAAATAAAGACATTATGTTGCAGTATGCTGTAATTGTGTTTTCTGGAAGGGTCCACAGTACAAAGTATTTTAACAAGCTGAAAAACAgaatacaaatgtattattattaagtttgatatattaaatatattttaagggctttatttataaataaacagtcaAGTTCTTTCTACAGATGTATTAttcaattttatacatttttttatacacaaagcTTCTCCTCGACTTGTTTTCccaaaatacattatatataaaagttttttttatcattataatgTTTAACAACCATGCCATTATAAGTACATTtgcatataacaaaaaaaaagtgcaaaaaaggtaataaattacatacataaaaaacataacatttcataaaaaaatagcaaaatacaATGAGGGTTTTTCCTGTAGTTTATGCCTTTCTATAAAAGACAACATCAATTGGaggttttgttttcatgatcTTCAGGGcttttatatgtgttttatacacttactggccactttatcaggtacaccggtccaactgcttgttaatgcagtgactttaaatgtggcatggttgttgatgccagtcggagtatttcagaaactgctgatctactgggattttcatgcacaaccatctctagggttgtgcatcaaatctgcagcaactgcgtgatgctatcctgtcattatggagcaaaatctctgaggaatatttccagtaccttgttgaatctacaccatgaaggattaaggcagttctgaagacaaaaggggtccAATCCGTTACTAGTGAGGTGTAACCTTATAAACTTAAAAAGTACACCGGTGTGTACTTTTATATacaccggtgagtgtatataaaagTACTACATATACTGCTTACTAActgtttagttgttttttttattctctacTTGTATCATGATGTACTGTTGGCATGTTGTGTGATTTGTATTTCTGTTGTTGCAGTATGTGTTCATATGTTCATATCAAAATAACGCTGAGCTCGTCTCGATGTGATGACGTCATCAGCTGCGCGCGCTCCCGAGTCCTGTCAGGCGAGGTGAGTAGAACTGTTTACCCTATTTTGCTTGTTTACCCGATTGTAacgttattttttttactgttttacagtgtaaatgatTTTCGTCGAAAGTATTGTAGCTTATGCTCTTATTTTCGAGGGCTTTATGTGTCCATTTCGCATACTAAACACCAAATAACAGTTACAAGATAAGAAAGCAAGCTGTAATGCTGTGAATATGTTATaaggtttctttaaaaaaacatacatttggaTTAATGTTGACAATTAACATGGCTGCTGTTAGTTTCTGGGTGTTTTTAAGTGTCGTTTGAGaaactattattatatttcacacgATAAAGTGACCAGAGCCCATATTCACAAAACATCTTAAAGCTAAAAGCAGCTTTAATTGCGAGGTGTAAGCCCTAATTACAGTTATGACTCCTAAATATTtgctttaaatatgttttacaatgtgttttAGCACAATCTAACTCATAAATCAGTGAAACGTAAGCAACGAAGTGACTCAAGTCACTAGGATGAAACTGAAAACTATCTTTTGctatattttagaaacatttgagcacaataagcatttataaatgtgtaccctgctgaaaaatccagctcaaaccagcctaggctggtcggctggttttagctggtcgaccagcctggttttagaggggttttggccacttccaggctggtctccagccatttccagcctggtcttagctggtcaggctgggagatgaccagctaaaaccagcttgaccagcctagccaagctgggagtccagccaaaaccagcttaaaccaggctggttgagctggttttagctggatttggctggtcattttccagcctgaccagctaagaccagcctggaagtggccaaaacccctctaaaaccaggctggtcaaccagctaaaaccagccgaccagcctaggctggtttaagctggaattTTCAGCAGGGTATATGCAGGGGTTTtcttacatgttttaaaatatgtttacagtaaTGTCAAAATACGTGAAAAGGGAACAATttgtatttacaaaaaatatagtaATGCAAATATATGTTTTACAAATGCACCtcggaattataaggttctctctgcgttcggaATGATTTGAAGataatgagcttcaaagtttttgcattccatagcagacAGTATGCGTGTAAcatgtttttcaaataaaaagtcttaaaatgtaaacaacttataaaaaaaacatcccatcatgtaaataagttgtcattttatgagaatatgtcaataactcaattttgacaaaaatgtcagaagcttataattctaaggtgacgatatgtagcttcaaatttaaaaaaatgtttttatgtgtttttggcaaataatttttttaatgtgtaaaaatacttgaatatatttacatttgcaaTAAGTCATTTAGTAGACGCTGTTATCCACAGAGACTTAgaagtaggcctgtcacaatcaTCGATAAATGGAGTTGTTGTACTACACatcgacatatatatatatat
>TCONS_00039789
GCTCCCGAGTCCTGTCAGGCGAGATCTGCTTGTCCTCCTTcagttcataaatatatatatatataaatactggaGTTTTCCCATCAGTCTACAAGTGAAGACGAGCATCAGAGCATCAGGGAGAAGTGAAATCTgaaagacagagtttattgaaggacagagagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagagCAAACGGAGCTAATGATGGAGAATGAGGAGAAACTTCTTTCTGTCAGGAagtgtttcacctgcactcagtgtggaaagagtttaacGTCCAACTACAGTCTCAAGcttcacatgatgattcacaccggagagaaaccgttcacatgtacCGAGTGTGGGATGAGTTTTAGGCAATCGGGAAACCTTAGTCAACACATGAAcgtccacaccggagagaaaacCCACAAGTGTGATCAATGCGGCAGCACTTTTTTGAAGGCTTCAAACCTGAAGGTCCATCTCAGAGTTCACACAAAAGAGAAGCCGTATTCGTGTTttgtgtgtggaaagagtttgacaCGTCAGCAGAGTTTAAAAAAACACCTGAAAATTCACACTGGGGTAAGAGAGTACGTGTGCTTTCAGTGTGggaagacttttatttcagctgaccatttgaaactgcaccagaggattcacactggagagaaaccgtacaagtgttcacactgcgacaagagcttCAGTCAGTTACATCGACTGAAgtcacatgagaggattcacacggACTAATGACATTGGTGCTGCCAAAAAATAATACCGGCACTGTCGGTCACCTACTTTGCACCCTATGGCTTGCAGCCTTTTgcataatttaatatatacaggggttggacaataaaactgaaacactggctaatttagtgttggaggtttcatggctagatttgaccagcctggtttccaatcttcattgattgcacattcaaccaataagagcagagtgtaaaggtttaattagcagagcAATGGCACAGTtttcttaaaatattgcaatccACAGAACTTTATGggtgacatacagttgaaaccagaagtttacacacacactgtaaaaaaaggaacataaccatgtCTGATGAGAAATCAGACTTAAcctttactattttaggtccattaggatttctagacagtcaaacgtttacacacatttccttggtattttttagatttgcttttaaactgtataactttagtGAAATGTTtcgggtctccttccacaagcttctcacaatagtttgcaggaatttcgacccattcctcctgacagaattggtgtaagaACTGAGAAGAGATTGGTCAACAAAAAGATTtgtgttgtcaaaaataaaagaatCTAAAGAACC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-55 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000104078 ENSDARG00000113365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039788 False 5270 mRNA 0.40 2 1384104 1397981
TCONS_00039789 True 1381 mRNA 0.41 3 1396444 1407856

Neighbor

gene id symbol gene type direction distance location
XLOC_019947 BX322657.1 coding upstream 35 1377331 ~ 1384069 (+)
XLOC_019943 si:ch73-138e16.6 coding upstream 7134 1313046 ~ 1376970 (+)
XLOC_019944 NA coding upstream 19243 1316752 ~ 1364861 (+)
XLOC_019946 znf45l coding upstream 22956 1352192 ~ 1361148 (+)
XLOC_019945 CU207221.2 coding upstream 50539 1330477 ~ 1333565 (+)
XLOC_019949 zgc:101130 coding downstream 13356 1421212 ~ 1424483 (+)
XLOC_019950 BX322657.2 coding downstream 23887 1431743 ~ 1433028 (+)
XLOC_019951 si:dkeyp-53d3.3 coding downstream 32846 1440702 ~ 1441490 (+)
XLOC_019952 si:dkeyp-53d3.5 coding downstream 54321 1462177 ~ 1466567 (+)
XLOC_019953 zgc:174222 coding downstream 61829 1469685 ~ 1472261 (+)
XLOC_019938 CU570769.1 non-coding upstream 116284 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 445277 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 566477 811600 ~ 817627 (+)
XLOC_019963 AL954741.1 non-coding downstream 169007 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 242272 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 252331 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 317712 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 470291 1878147 ~ 1880670 (+)

Expression


Co-expression Network