XLOC_019949 (zgc:101130)


Basic Information

Item Value
gene id XLOC_019949
gene name zgc:101130
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1421212 ~ 1424483 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039790
GTACTTCCGGAGCTGCCGCTTTTAGCAGTAGATAAATAGAATGGCGATATGATTGCTGCTTTGATCGTACGCGTTCGGAACGCTTCTTCTGTTCGATTGTTTGGAACGCGAGTTCTATTTTGCTGTTCACGCGGGTAAAACGGGAATAGCGGCGAAACGGACTCTCATTAGCAAATGTAAACAGCTCAATATAGAGGTCCGACTGTTTGTTAATCAGTACCTCGGGACTGCTGTTACGGATTGAGAATTGGTATTGTTAACCCTATTGGCGGTCAATACTAGTATACTCTACATGAGAAAATAGTAGAATATCCAGAGTTAAGAGTTCACTGAAGAGGATGGATCCATATGAAGATTTTGCAGAACAAAGAGatCTGATGGAGGTAAAAGAGGAACCTACAAAGCTGAacgaggaggaagaggaggaggaggagccgccAAGTATCTATTACATCACTGAAGAAAACCCGTCGACTTTATCGCCAACAGCAACCAAACTTAAAAACTACGTCTGTTCTATCTGTGAAAAGAGCTTTGCAAGGAAATACAGATTAGATCGGCACGTCCGAAcgcacaccggagagaaaccgttcgCGTGCGTCGAGTGCGCAAAGAGTTTCGCGTGCAAAGAAAAACTCGCCAGACACGCGAAAATACACACCGGAGAAAAACCGTACACGTGCAGTCTATGCGGGAAGAGTCTGGCGTGTAAAACGAGATTAAAGcgacacatgaacacacacaccgGAGAAAAGCCGCACGTTTGTTTGCAATGCGGGAAATGCTTCACGTGTAACGCAAGTCTACAGCGGCACGTCAAACTGCACACCGGAGAGCGTCCGCATATATGTCGTGAGTGCGGGAAGGGCTTCATACGCAATGAAAAACTAATCAGTCACATGACCATTCACACCGGAGAGCGGCCTTTTATTTGCGACGAATGCGGGAAAAGTTTCCGACACGTCAATGGACTTCGCGATCATCAACTTTCGCACTCCGCCGTCAAATCCTTTCCGTGCGATCAATGCAATAAAGAGTTTATCACTCCATCTGCGCTGAAAAGACACCTCAGGGTTCACTCTGGCGAGAAGCCGTATTTGTGTACGCTGTGTGGGCGGAGTTTCTCTCGAGTGGATATTTTTAAAAGGCATCAGGAGGTCCATATTGGTGTGAAGGATCACGTCTGCTTCGAATGCGGGAAGGCGTTTATTACGTCCGACCAGCTCAAGcagcaccagaggattcacagcGGAGAAAAACCCTACACGTGTTCGGTTTGCGCAAAGAGTTTCACGCAGTCGGCGCATCTGAAAGTACACGACAGAGTTCACCATAAGAAAACTGTGCAGCACTGTGATACGGTGCTCGAAGAGTTTCAGGCGGGCGAGCCGTTTGTTGATTCATTTGAACAAGCATCATTCGATGAATCTAACATTGTGGATTTTTCATGTTCATGAAAATTATGTGTGTAGGCCAATATTAtggaattatatataaatatatatatacacagtggtccctcgttattcgcaggagttacgttctaaaaataacctgtGATAGGCGAAATTCGCAAATGAGTCTgctttgttttacaattattataaatagtttaaggctgtaaaacccctcactgcacacgtTGTACACTTTTCTCTCAAAGTTGAAACCTTCATAGGAAAATTAGTCcagtattataaaaaaaaaaccaaagatcaaaaccatttcatcttcatttgtttattacataagccgggtaacttctaccttccttctacctaactttttgtgcgatggttagcatcttgcCTTTTAGGTGCTACCACAGGTGCCTTTGACGGTGCAGAACGTTTAGTCGCTATTTTGGGAAGAAATCTtggtacagcacttcagagtcacactgctagctaTCAAAGATTCATGTCAATTTGACGAGCTGAAcccattctgtactgtacaggagacaattattgacaatggtctacagccaatcaggacgcagaacacaatgcgctaatCAGGATGCAGATGTGCTgtagaaaaaaagcatgtcaatgTGCTCAATAAAAATCTGCGAGACCGCGTAAA

Function

symbol description
zgc:101130 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF224 (zinc finger protein 224) and ZNF30 (zinc finger protein 30).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-72 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF224 (zinc finger protein 224) and ZNF30 (zinc finger protein 30).

Ensembl:

ensembl_id ENSDARG00000101926

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039790 True 2088 mRNA 0.44 2 1421212 1424483

Neighbor

gene id symbol gene type direction distance location
XLOC_019948 BX322657.3 coding upstream 13356 1384104 ~ 1407856 (+)
XLOC_019947 BX322657.1 coding upstream 37143 1377331 ~ 1384069 (+)
XLOC_019943 si:ch73-138e16.6 coding upstream 44242 1313046 ~ 1376970 (+)
XLOC_019950 BX322657.2 coding downstream 7260 1431743 ~ 1433028 (+)
XLOC_019951 si:dkeyp-53d3.3 coding downstream 16219 1440702 ~ 1441490 (+)
XLOC_019952 si:dkeyp-53d3.5 coding downstream 37694 1462177 ~ 1466567 (+)
XLOC_019953 zgc:174222 coding downstream 45202 1469685 ~ 1472261 (+)
XLOC_019954 si:ch211-255f4.2 coding downstream 56505 1480988 ~ 1515020 (+)
XLOC_019944 NA non-coding upstream 56351 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 153392 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 482385 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 603585 811600 ~ 817627 (+)
XLOC_019963 AL954741.1 non-coding downstream 152380 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 225645 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 235704 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 301085 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 453664 1878147 ~ 1880670 (+)

Expression


Co-expression Network