G12580


Basic Information

Item Value
gene id G12580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13947329 ~ 13952338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU14924
CCCCTTTGTCTTGTTTCGAGCATGTGTGTGAGCACTGTGTAGTTgcatagacagggagagagaaacaaaaaggGGGGGTAGTTCCCTTTGTTCATCAGACTCTGAGTAGCTGTGGTTGAGCCTGCAGCCGTGTTGCTGTTAGACATggttagggatggagcgagggtgttGTTGTTAGGGACGGAGCGAGGGTGTTGTTGTTAGACATggttagggatggagcgagggtgttgttgttagggatggagcgagggtgttgtttttagggatggagcgagggtgttGTTGTTAGACATGGTTAGGGATGGAGCCAGGGTGTTGTTgttagggatggagggagggtgttgttgttagggatggagggagggtgttgttgttagggatggagggagggtgttgttgttagggatggagcgagggtgttgttgttagggatggagcgaggGTGTTGTtgttagggatggagcgagggtgttATTGTTAGACATGGTTAGGGATGGAGCGAGTGTGTTGTTGTTAGACATggttagggatggagcgagggtgttgctgttagggatggttagggatggagcgagggtcTTGTTGTTAGACATTgttagggatggagtgagggtgttgctgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttgctgttagacatggttagggatggagtgagggtgttgctgttagggatggagtgaggggtgttgctgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttgctgttagggatggttagggatggagcgagg
>TU14925
CCCCTTTGTCTTGTTTCGAGCATGTGTGTGAGCACTGTGTAGTTgcatagacagggagagagaaacaaaaaggGGGGGTAGTTCCCTTTGTTCATCAGACTCTGAGTAGCTGTGGTTGAGCCTGCAGCCGTGTTGCTGTTAGACATggttagggatggagcgagggtgttGTTGTTAGGGACGGAGCGAGGGTGTTGTTGTTAGACATggttagggatggagcgagggtgttgttgttagggatggagcgagggtgttgtttttagggatggagcgagggtgttGTTGTTAGACATGGTTAGGGATGGAGCCAGGGTGTTGTTgttagggatggagggagggtgttgttgttagggatggagggagggtgttgttgttagggatggagggagggtgttgttgttagggatggagcgagggtgttgttgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttgttgttagacatggttagggatggagcgagggtgttGCTGTTAGACACggttagggatggagcgagggtgttgctgttagacATggttagggatggagcgagggtgttgctgttagacatggttagggatggagcgagggtgttGTTGTAGACATggttagggatggagcgagggtgttGTTGTAGACATGGTTAGGGATGGGGTGAGGGTGTTGTtgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttgctgttagggatggagcgagggtgttGTTGTTAGACATGGTTAGGGATGGAGCGAGTGTGTTGTTGTTAGACATggttagggatggagcgagggtgttgttgttagacatggaaagggatggagagagggtgttgttgttagacatggttagggatggagcgagggtgttgttgttagacatggttagggatggagcgagggtgttATTGTTAGACATGGTTAGGGATGGAGCGAGTGTGTTGTTGTTAGACATggttagggatggagcgagggtgttgttgttagacatggttagggatggagcgagggtgttGTTGTTAGACATGGTTAGGATGGAGCGAGCGTGTTGT

Function

NR:

description
PREDICTED: zinc finger protein 36, C3H1 type-like 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14924 False 922 lncRNA 0.43 2 13947329 13952338
TU14925 True 1119 lncRNA 0.42 2 13947329 13948640

Neighbor

gene id symbol gene type direction distance location
tm2d1 LOC106574044 coding upstream 193654 13734763 ~ 13753675 (+)
pdzk1ip1 LOC106574040 coding upstream 505801 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 516212 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 536039 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 651877 13238613 ~ 13295452 (+)
LOC110508285 LOC106574085 coding downstream 188158 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 210047 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 220181 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 240129 14192456 ~ 14214939 (+)
axdnd1 axdnd1 coding downstream 267829 14220167 ~ 14244412 (+)
G12535 NA non-coding upstream 93559 13853491 ~ 13853770 (+)
G12509 NA non-coding upstream 134056 13811936 ~ 13813273 (+)
G12504 NA non-coding upstream 148032 13795935 ~ 13799297 (+)
G12499 NA non-coding upstream 158467 13779607 ~ 13788862 (+)
G12497 NA non-coding upstream 171458 13775533 ~ 13775871 (+)
G12587 NA non-coding downstream 8117 13960455 ~ 13960886 (+)
G12644 NA non-coding downstream 80898 14033236 ~ 14034005 (+)
G12650 NA non-coding downstream 88380 14040718 ~ 14040988 (+)
G12651 NA non-coding downstream 90979 14043317 ~ 14043524 (+)
G12653 NA non-coding downstream 97231 14049569 ~ 14049774 (+)
G12410 NA other upstream 315439 13617059 ~ 13666871 (+)
LOC110523899 LOC106574090 other upstream 2432947 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3786043 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 3955787 9980527 ~ 9991542 (+)
G13380 NA other downstream 727012 14679350 ~ 14679578 (+)
G13381 NA other downstream 727360 14679698 ~ 14680027 (+)
G13391 NA other downstream 747838 14700176 ~ 14700730 (+)
G13434 NA other downstream 859433 14811771 ~ 14812624 (+)

Expression


Co-expression Network