G12675


Basic Information

Item Value
gene id G12675
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14090734 ~ 14091351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU15044
ttgagacaatatcaacaatggactaacgAAACAAGTACCAAAAGATAGCTTTTgtgtggaattttcctttaagtgcattgagcagggctggagggctATAAGAGGTGATGCCCGGCCAGTACTCTCTGAAGCTCAAGTTCCTCATCAGGGGGAATACCTGAaccaggggagggaggaggagacagagcgcCCATCAAACAGTTCTCCCATTGTAGCATAGCGGCTATGGAATTTGATTCAGCCAGAGATATGGCAAGCGCTTTGGGGAGGGGAGTAGAAATGCACAGGTACACTGAAGACCAAAGGCCCCGCTGATGGGTTTGGAGGTAGGTCATCTTAAATTTCACTTCTTGTGAACACTTTTTTACTTTCTAGCACACTTTGTTCCCCAATAAAATATGAGAAAATGTTCCCGACCTTTCTCAGAATGGCTGAGATACAAACACTGTAAGTATGAATCTGAGAATCTGATTCAACCTTATAAATTTgaattctttaaaaaagtatctTATTAAATAAAAGTGTGTAGTCTCGGATGAAGAAATCACAACAATAAAGTGAGG
>TU15049
ttgagacaatatcaacaatggactaacgAAACAAGTACCAAAAGATAGCTTTTgtgtggaattttcctttaagtgcattgagcagggctggagggctATAAGAGGTGATGCCCGGCCAGTACTCTCTGAAGCTCAAGTTCCTCATCAGGGGGAATACCTGAaccaggggagggaggaggagacagagcgcCCATCAAACAGTTCTCCCATTGTAGCATAGCGGCTATGGAATTTGATTCAGCCAGAGATATGGCAAGCGCTTTGGGGAGGGGAGTAGAAATGCACAGGTACACTGAAGACCAAAGGCCCCGCTGATGGGTTTGGAGGTAGGTCATCTTAAATTTCACTTCTTGTGAACACTTTTTTACTTTCTAGCACACTTTGTTCCCCAATAAAATATGAGAAAATGTTCCCGACCTTTCTCAGAATGGCTGAGATACAAACACTGTAAGTATGAATCTGAGAATCTGATTCAACCTTATAAATTTgaattctttaaaaaagtatctTATTAAATAAAAGTGTGTAGTCTCGGATGAAGAAATCACAACAATAAAGTGAGGCAACAATCTAAATATTCATGTGCAACATGTTATCTCAATAAACATTTGGCTTTCA
>TU15047
GCTCAAGTTCCTCATCAGGGGGAATACCTGAaccaggggagggaggaggagacagagcgcCCATCAAACAGTTCTCCCATTGTAGCATAGCGGCTATGGAATTTGATTCAGCCAGAGATATGGCAAGCGCTTTGGGGAGGGGAGTAGAAATGCACAGGTACACTGAAGACCAAAGGCCCCGCTGATGGGTTTGGAGGTAGGTCATCTTAAATTTCACTTCTTGTGAACACTTTTTTACTTTCTAGCACACTTTGTTCCCCAATAAAATATGAGAAAATGTTCCCGACCTTTCTCAGAATGGCTGAGATACAAACACTGTAAGTATGAATCTGAGAATCTGATTCAACCTTATAAATTTgaattctttaaaaaagtatctTATTAAATAAAAGTGTGTAGTCTCGGATGAAGAAATCACAACAATAAAGTGAGG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU15044 False 563 lncRNA 0.41 1 14090734 14091296
TU15049 False 618 lncRNA 0.53 1 14090734 14091351
TU15047 True 433 lncRNA 0.50 1 14090864 14091296

Neighbor

gene id symbol gene type direction distance location
tm2d1 LOC106574044 coding upstream 337059 13734763 ~ 13753675 (+)
pdzk1ip1 LOC106574040 coding upstream 649206 13436016 ~ 13441528 (+)
LOC110485322 LOC106574039 coding upstream 659617 13425566 ~ 13431117 (+)
LOC110485223 LOC106574083 coding upstream 679444 13409282 ~ 13411290 (+)
LOC110538561 LOC106574035 coding upstream 795282 13238613 ~ 13295452 (+)
LOC110508285 LOC106574085 coding downstream 49145 14140496 ~ 14144946 (+)
LOC110485648 LOC106574045 coding downstream 71034 14162385 ~ 14171600 (+)
LOC110485979 LOC106574047 coding downstream 81168 14172519 ~ 14185257 (+)
LOC110486057 NA coding downstream 101116 14192456 ~ 14214939 (+)
axdnd1 axdnd1 coding downstream 128816 14220167 ~ 14244412 (+)
G12670 NA non-coding upstream 6758 14083471 ~ 14083976 (+)
G12663 NA non-coding upstream 22048 14068471 ~ 14068686 (+)
G12662 NA non-coding upstream 24868 14065600 ~ 14065866 (+)
G12655 NA non-coding upstream 38285 14052163 ~ 14052449 (+)
G12654 NA non-coding upstream 39298 14051227 ~ 14051436 (+)
G12680 NA non-coding downstream 7657 14099008 ~ 14099291 (+)
G12692 NA non-coding downstream 34979 14126330 ~ 14190815 (+)
G13121 NA non-coding downstream 330054 14421405 ~ 14421630 (+)
G13334 NA non-coding downstream 477748 14569099 ~ 14571242 (+)
G13359 NA non-coding downstream 542612 14633963 ~ 14635553 (+)
G12410 NA other upstream 458844 13617059 ~ 13666871 (+)
LOC110523899 LOC106574090 other upstream 2576352 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 3929448 10140230 ~ 10162948 (+)
LOC110510920 LOC106574155 other upstream 4099192 9980527 ~ 9991542 (+)
G13380 NA other downstream 587999 14679350 ~ 14679578 (+)
G13381 NA other downstream 588347 14679698 ~ 14680027 (+)
G13391 NA other downstream 608825 14700176 ~ 14700730 (+)
G13434 NA other downstream 720420 14811771 ~ 14812624 (+)

Expression


Co-expression Network