XLOC_019951 (si:dkeyp-53d3.3)


Basic Information

Item Value
gene id XLOC_019951
gene name si:dkeyp-53d3.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1440702 ~ 1441490 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039792
AGACGCACCGTCATGTCTAAACCACAGGAGCACACATGTGAAGAGAAGACCAAATGCAAGACCAGTTTCATCTGCACTGAGTGTGGCAAGAATCTGTCATGCAAGAGGACGTTTACGtgtcacatgaggattcacaccggagagggTCCATAcatctgcactcagtgtgggaagtgtCTGTCAAGCAGTGAGACTTTTAAGtttcacatgatgattcacagcggagagaaaccgtacacgtgCACGCAGTGTGGGATGATTTTCAGACAGTCGCCAAGCCTCAGGCGACACCTGCTgctccacactggagagaagcggCACAAGTGTGATCAATGCGGCAAGACTTTTTTGAGGGGTGCACAGCTGAAGATCCACCGTAGAGTTCATACAAATGAGAAGCCGTATTCGTGTTCTGAGTGTGGAAAGGGTTTCATACGGCCGGCTCATTTAAGACGACATGAGAAGacccacactggtgtgagagagtacATGTGCTTCCAGTGTGAGAAGACTTTCGTTACAGCTGGAGCTTTAAAGCGACACCAGAtgactcacaccggagagaaaccgtacaagtgtgcACACTGCGACAAGCTATTTACTCGGACTGAACATCTGAAagtacacatgaggatccacactggagagaaaccgtgcACTTGTACTCGGTGTGGGACGAGTTTCGCACAATTAGCAAGCCTTAAATATCACATgaggagccacactggagagaaacagCCCGAATGACACATTTGGAAAAATTGAAAATCGCAAACTCAAAGAGTAGGT

Function

symbol description
si:dkeyp-53d3.3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-644 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDARG00000098664

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039792 True 789 mRNA 0.48 1 1440702 1441490

Neighbor

gene id symbol gene type direction distance location
XLOC_019950 BX322657.2 coding upstream 7674 1431743 ~ 1433028 (+)
XLOC_019949 zgc:101130 coding upstream 16219 1421212 ~ 1424483 (+)
XLOC_019948 BX322657.3 coding upstream 32846 1384104 ~ 1407856 (+)
XLOC_019947 BX322657.1 coding upstream 56633 1377331 ~ 1384069 (+)
XLOC_019946 znf45l coding upstream 79554 1352192 ~ 1361148 (+)
XLOC_019952 si:dkeyp-53d3.5 coding downstream 20687 1462177 ~ 1466567 (+)
XLOC_019953 zgc:174222 coding downstream 28195 1469685 ~ 1472261 (+)
XLOC_019954 si:ch211-255f4.2 coding downstream 39498 1480988 ~ 1515020 (+)
XLOC_019955 si:dkey-4c15.8 coding downstream 50174 1491664 ~ 1493106 (+)
XLOC_019956 zgc:173486 coding downstream 60076 1501566 ~ 1511181 (+)
XLOC_019944 NA non-coding upstream 75841 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 172882 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 501875 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 623075 811600 ~ 817627 (+)
XLOC_019963 AL954741.1 non-coding downstream 135373 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 208638 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 218697 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 284078 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 436657 1878147 ~ 1880670 (+)

Expression


Co-expression Network