XLOC_019952 (si:dkeyp-53d3.5)


Basic Information

Item Value
gene id XLOC_019952
gene name si:dkeyp-53d3.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1462177 ~ 1466567 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039793
attcagcgtcgagtcttcagagctgagCTCCATCAGTAAAAGACAAAGCaaagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaatcaaacaggaagagactgaagaactaatagATGTGGTTGTGAAGGAGGAGATTGACGCACTCTGTGAACATGAGGAAAAACATGATGTCAAAAGGGAAAGCAAAACTCGAACTAATACTGCGAATAATAAAACTAGAAAGAAAAGTCCTTTCACCTGCTACCgctgtggaaagagtttcagggTCCAATACAATCTCAAGCTTCACATGTGGATTCACACTAGCAAGAAGCCCTATTACTGTTCATACTGCACAAAGGGATTCCTTCATGCAGAACATGTGATATTGCACGAGAGGAcacacaccggagagaaaccctaTCACTGCACTGTTTGTGGGACGAGATTCACAAGTCCATCTTCTCTAAGAACACACACTAAAAACCTTCACAACCAGATGGTGAAAAAGGAGGAGAGCGAAGACCTGAAAGATACAGTGAAGAAGCCTTATTCATGTTCTGAGTGTGAAAAGAGTTTTATTTGTGAGCCATATTTAAAAgcacatcagaagatccacaccggtCTGAAACCCCACGTGTGCTTCCAGTGTGAGAAGGCTTTTACTAGATCTGGAGACTTGAGGCGGCACGAGAGGACGCACGATGTGGAGAAACCATACAAATGTACTGAGTGCAAGCTGAGATTCAGACACCAAACAAAGCTCTTTGAACACATGACCGTCCACGCTGGAGACAAACCACACAAATGTAACCAATGCGACAGAGCGTTTTCCAGGGCTTCAAAGCTGAAGACCCATCTTAGATTTCATACAAATGGGAACTCTTATGTGTTCCTTTAGGAAAGAGGTTTGCACATCTGCGAAATGTTCCTGAGCTCTTCAAACACATCAGCTTTGT
>TCONS_00039794
AGCTCCATCAGTAAAAGACAAAGCaaagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaatcaaacaggaagagactgaagaactaatagATGTGGTTGTGAAGGAGGAGATTGACGCACTCTGTGAACATGAGGAAAAACATGATGTCAAAAGGGAAAGCAAAACTCGAACTAATACTGCGAATAATAAAACTAGAAAGAAAAGTCCTTTCACCTGCTACCgctgtggaaagagtttcagggTCCAATACAATCTCAAGCTTCACATGTGGATTCACACTAGCAAGAAGCCCTATTACTGTTCATACTGCACAAAGGGATTCCTTCATGCAGAACATGTGATATTGCACGAGAGGAcacacaccggagagaaaccctaTCACTGCACTGTTTGTGGGACGAGATTCACAAGTCCATCTTCTCTAAGAACACACACTAAAAACCTTCACAACCAGATGGTGAAAAAGGAGGAGAGCGAAGACCTGAAAGATACAGTGAAGAAGCCTTATTCATGTTCTGAGTGTGAAAAGAGTTTTATTTGTGAGCCATATTTAAAAgcacatcagaagatccacaccggtCTGAAACCCCACGTGTGCTTCCAGTGTGAGAAGGCTTTTACTAGATCTGGAGACTTGAGGCGGCACGAGAGGACGCACGATGTGGAGAAACCATACAAATGTACTGAGTGCAAGCTGAGATTCAGACACCAAACAAAGCTCTTTGAACACATGACCGTCCACGCTGGAGACAAACCACACAAATGTAACCAATGCGACAGAGCGTTTTCCAGGGCTTCAAAGCTGAAGACCCATCTTAGATTTCATACAAATGGGAACTCTTATGTGTTCCTTTAGGAAAGAGGTTTGCACA

Function

symbol description
si:dkeyp-53d3.5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-485 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF530 (zinc finger protein 530).

Ensembl:

ensembl_id ENSDARG00000101542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039793 False 955 mRNA 0.43 4 1462177 1466567
TCONS_00039794 True 888 mRNA 0.43 3 1462997 1466525

Neighbor

gene id symbol gene type direction distance location
XLOC_019951 si:dkeyp-53d3.3 coding upstream 20687 1440702 ~ 1441490 (+)
XLOC_019950 BX322657.2 coding upstream 29149 1431743 ~ 1433028 (+)
XLOC_019949 zgc:101130 coding upstream 37694 1421212 ~ 1424483 (+)
XLOC_019948 BX322657.3 coding upstream 54321 1384104 ~ 1407856 (+)
XLOC_019947 BX322657.1 coding upstream 78108 1377331 ~ 1384069 (+)
XLOC_019953 zgc:174222 coding downstream 3118 1469685 ~ 1472261 (+)
XLOC_019954 si:ch211-255f4.2 coding downstream 14421 1480988 ~ 1515020 (+)
XLOC_019955 si:dkey-4c15.8 coding downstream 25097 1491664 ~ 1493106 (+)
XLOC_019956 zgc:173486 coding downstream 34999 1501566 ~ 1511181 (+)
XLOC_019957 si:ch211-255f4.5 coding downstream 50751 1517318 ~ 1524675 (+)
XLOC_019944 NA non-coding upstream 97316 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 194357 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 523350 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 644550 811600 ~ 817627 (+)
XLOC_019963 AL954741.1 non-coding downstream 110296 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 183561 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 193620 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 259001 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 411580 1878147 ~ 1880670 (+)

Expression


Co-expression Network