G13370 (LOC106613575)


Basic Information

Item Value
gene id G13370
gene name LOC106613575
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14654353 ~ 14654620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU15827
CCTGGCCGGAACTCGAACCCTAGTGAGAAGGGAGTGAAGAGCTGGAACTTCTCGGAGAACTTGAGAGGTCCGTTGGGGCTCTGTGGCCGGTTGCACTCCCAGCGCTTGAAGCCCTTCATGCGGTGGTCGCAGGTGGTGTAGCCGTCGTAGTTGACCATGAAGAGGATGTAACGCTCCATGCGCTCCAGGGGGAGCGGGTCCTCGTAGTGGGGGCAGTAGATGTCCAGGTAGTCGTTGATGGCCACCTCCACGGTGTACTCCCCATGGA

Function

NR:

description
PREDICTED: ephrin-A2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15827 True 268 lncRNA 0.44 1 14654353 14654620

Neighbor

gene id symbol gene type direction distance location
LOC110486505 LOC106574055 coding upstream 158505 14350545 ~ 14495848 (+)
gpr52 LOC106574057 coding upstream 248196 14400579 ~ 14406157 (+)
LOC110486340 fam163a coding upstream 304726 14318536 ~ 14349627 (+)
tdrd5 LOC106574052 coding upstream 350247 14251389 ~ 14304106 (+)
axdnd1 axdnd1 coding upstream 409941 14220167 ~ 14244412 (+)
LOC110487584 LOC106574067 coding downstream 339317 14993937 ~ 15003427 (+)
LOC110487655 LOC106574076 coding downstream 361518 15016138 ~ 15019092 (+)
elav1 elav1 coding downstream 369799 15024419 ~ 15026535 (+)
LOC110487930 LOC106574072 coding downstream 420564 15075184 ~ 15080304 (+)
LOC110529430 LOC106574078 coding downstream 463230 15117850 ~ 15126002 (+)
G13366 NA non-coding upstream 9512 14644591 ~ 14644841 (+)
G13365 NA non-coding upstream 10532 14643605 ~ 14643821 (+)
G13364 NA non-coding upstream 11357 14642730 ~ 14642996 (+)
G13363 NA non-coding upstream 11743 14642363 ~ 14642610 (+)
G13359 NA non-coding upstream 18800 14633963 ~ 14635553 (+)
G13371 NA non-coding downstream 1155 14655775 ~ 14656365 (+)
G13375 NA non-coding downstream 12035 14666655 ~ 14666903 (+)
G13383 NA non-coding downstream 30873 14685493 ~ 14685712 (+)
G13386 NA non-coding downstream 34417 14689037 ~ 14689301 (+)
G13387 NA non-coding downstream 35468 14690088 ~ 14690289 (+)
LOC110486057 NA other upstream 446339 14192456 ~ 14214939 (+)
G12410 NA other upstream 1022463 13617059 ~ 13666871 (+)
LOC110538561 LOC106574035 other upstream 1394357 13238613 ~ 13295452 (+)
LOC110523899 LOC106574090 other upstream 3139971 11433102 ~ 11514427 (+)
gipc3 LOC106574151 other upstream 4493067 10140230 ~ 10162948 (+)
G13380 NA other downstream 24730 14679350 ~ 14679578 (+)
G13381 NA other downstream 25078 14679698 ~ 14680027 (+)
G13391 NA other downstream 45556 14700176 ~ 14700730 (+)
G13434 NA other downstream 157151 14811771 ~ 14812624 (+)
G13639 NA other downstream 306934 14961554 ~ 14962003 (+)

Expression


Co-expression Network