XLOC_019957 (si:ch211-255f4.5)


Basic Information

Item Value
gene id XLOC_019957
gene name si:ch211-255f4.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1517318 ~ 1524675 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039802
GCTCCCGCCACGCATTGATGACGTCAGCACTGACGCGTTCACtcagcgtcgagtcttcagagctgagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagGTGTGAAGGTGGAAGAGAGTGAAGCactgagtgaagatgaggagaaacatcatgtcaaaaATGTTAAGGTGGAGAAGAGTGAAGCactgagtgaagatgaggagaaacatcatgtcaaagAGCTGAATGAAGACATGAAAATTTGCTTTAATGTTCATTCAAAGACTAAACCTTTTCTATGCTCTTTGTGCGGGAAGAGTTACAATTATCCACACGGTTTAAGGCAACAtcagaggactcacactggagagaaaccgtacaagtgttcagaCTGCCACAAGAGATTCAGCCAGTCACATTATCTGAGAAGACACCAGGTGACTTACACTGGAAAGAAAcattacaagtgttcacactgcgagcGAACATTCAGTGAGTCAGAAAAT

Function

symbol description
si:ch211-255f4.5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103477

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039802 True 548 mRNA 0.43 5 1517318 1524675

Neighbor

gene id symbol gene type direction distance location
XLOC_019954 si:ch211-255f4.2 coding upstream 2298 1480988 ~ 1515020 (+)
XLOC_019956 zgc:173486 coding upstream 6137 1501566 ~ 1511181 (+)
XLOC_019955 si:dkey-4c15.8 coding upstream 24212 1491664 ~ 1493106 (+)
XLOC_019953 zgc:174222 coding upstream 45057 1469685 ~ 1472261 (+)
XLOC_019952 si:dkeyp-53d3.5 coding upstream 50751 1462177 ~ 1466567 (+)
XLOC_019958 znf1183 coding downstream 1365 1526040 ~ 1606312 (+)
XLOC_019959 si:ch211-255f4.7 coding downstream 14698 1539373 ~ 1555366 (+)
XLOC_019960 si:ch211-255f4.8 coding downstream 32273 1556948 ~ 1557773 (+)
XLOC_019961 AL954741.2 coding downstream 36316 1560991 ~ 1567970 (+)
XLOC_019962 si:ch211-255f4.9 coding downstream 43631 1568306 ~ 1569034 (+)
XLOC_019947 BX322657.1 non-coding upstream 133249 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 152457 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 249498 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 578491 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 699691 811600 ~ 817627 (+)
XLOC_019963 AL954741.1 non-coding downstream 52188 1576863 ~ 1577746 (+)
XLOC_019970 BX649416.2 non-coding downstream 125453 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 135512 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 200893 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 353472 1878147 ~ 1880670 (+)

Expression


Co-expression Network