XLOC_019958 (znf1183)


Basic Information

Item Value
gene id XLOC_019958
gene name znf1183
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1526040 ~ 1606312 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039803
CGTGATGACGTCATCAGTGACGCGATTATgcagcgtcgagtcttcagagctgagatttctctgtttgttctcctgaagctctgccaccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAAGGTGAAAAGTGAAGaactgagtgaagatgaggagaaacatcatgtcaa
>TCONS_00039804
ATGACGTCATCAGTGACGCGATTATgcagcgtcgagtcttcagagctgagctctgccaccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagacccgAGTGAAGACATGAAGGTCTACCTTGATCTCCATATAAAGCCGAAGCCTGTCTTATGCTCTCTGTGTGGCAAGAGTTTTGCATGCAAGCGGAGTTTGAGAAGACATCAGActattcacactggagagaaaccgtaccaGTGTTCACAGTGCGACAGCAGATTCCGTCAGGCAGAATATCTGAAAAAGCATGAGATGATCCAcagtggagagaaaccattcaagtgttcacactgcgacaagagcttCAGCTTGTCCGTATATTTGAAAACGCACGAGAGAACTCAcagtggagagaaaccgtacacgtgtatcgagtgtgggaagagtttcaggcgATTATCACACCTTAAACGACACatgctgatccacactggagagaaagcGCACGGATGTGAGCAATGCGGCAAAGCGTTTTCAAGACCTACAGAGCTGAGGATCCATCTTAGAGTTCACACAAAGGAGAAACCGTATCCATGCTCtgtgtgtgggaagagtttttcgCAGACGTCAAGTTTAAGActacatcagaagatccacatcGGAGTGAGAGAGTATGTGTGCGTTGAATGTAACAAGACTTTTATTAGATCCGGAGACCTGAAAcagcaccagaggattcacactggagagaaaccgttcacatgtacTGAATGTGGGAAGAGCTTCACGAAGTTAGCAAtcctttataaacacatgatgatGCACACTGGAGAGAAGTCATAG

Function

symbol description
znf1183 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000111614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039803 False 243 mRNA 0.43 3 1526040 1531891
TCONS_00039804 True 888 mRNA 0.46 3 1526044 1606312

Neighbor

gene id symbol gene type direction distance location
XLOC_019957 si:ch211-255f4.5 coding upstream 1365 1517318 ~ 1524675 (+)
XLOC_019954 si:ch211-255f4.2 coding upstream 11020 1480988 ~ 1515020 (+)
XLOC_019956 zgc:173486 coding upstream 14859 1501566 ~ 1511181 (+)
XLOC_019955 si:dkey-4c15.8 coding upstream 32934 1491664 ~ 1493106 (+)
XLOC_019953 zgc:174222 coding upstream 53779 1469685 ~ 1472261 (+)
XLOC_019966 znf1183 coding downstream 3871 1610183 ~ 1613586 (+)
XLOC_019967 si:ch211-255f4.13 coding downstream 9379 1615691 ~ 1619230 (+)
XLOC_019968 si:dkey-1b17.1 coding downstream 24374 1630686 ~ 1633473 (+)
XLOC_019969 si:dkey-1b17.2 coding downstream 35235 1641547 ~ 1644006 (+)
XLOC_019970 BX649416.2 coding downstream 43816 1650128 ~ 1653938 (+)
XLOC_019947 BX322657.1 non-coding upstream 141971 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 161179 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 258220 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 587213 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 708413 811600 ~ 817627 (+)
XLOC_019971 NA non-coding downstream 53875 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 119256 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 271835 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 400929 2007241 ~ 2290657 (+)

Expression


Co-expression Network