XLOC_019961 (AL954741.2)


Basic Information

Item Value
gene id XLOC_019961
gene name AL954741.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1560991 ~ 1567970 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039810
ATGAGGACGCACACTGCAGAGACACCTTACAGGTGTTCGCACTGCGACAAAATATTCAGCAAGTCTGGACAACTGAGAGCACACAAGAAGATCCACACCGGGGAGAAACCGTTTCACTGCGTCGCCTGTGGGAGGAGTTTCACATATTTGTCTTCTCTGCGTTTACACACAAAAAACTATCATGACCTGAGTGAAGACATGAAGATCTACTTTAACGTTCATTCAAAGACCAAGCCTTTTCTATGCTCTTTGTGCGGAAAGAGTTTCAATCGTCCACACTGTTTGAGAAAACATCAGATGacgcacactggagagaaaccgtacaagtgttcacactgcggcaAGGCTTTCAGCCAGTCAGGaaacctgaaaacacatgagaggaatcacactggagagaaaccgttcacatgtactccgtgtgggaagagtttcacacaCTCCTCAGATTtcaatcgacacatgaggatccacactggagagaaaccgcacGAATGTGATCAGTGCGATAAAGCATTCCTGAGGGCTTCAGATCTGAGGATCCATCGTAGAGTtcatacaaaggagaagccgtattcatgctctgagtgtggaaagagatTTACATGGCAGTCGAGTGTAAGGAAACATGAGAAGATCCACGCTGGAGTGAGGGAGTTCGAGTGCTCCgagtgtgagaagagttttatCACGGCTGGAGAACTGAAacggcaccagaggattcacaccggagagaaaccgtacacatgtGCAGAGTGTGGGAAGAAGTTCACCAAATTATCATACCTTTTTAACCACATGAATATCCACTCTGGAGAGAAACCtcacaagtgttcacactgcgacaaggcCTTCGTTCAGTTACAAAGCCTGAAAGCACATGGGAGGATTCACGCTGAAGAGAAAacacaaatgtgatcaatgcggcGAAACATTTTTGAGTGCGGTACCTCGGTATAGTCATATAATAAAAGATCAGTATGTGCAAGTGTCAATACCTTGAGCCTGAGATACCATTGTTTCCTTATTCTCATGTAAATTCTGTGAGTTTAAAAACAGGCCAATCGGAACACAATGCGGACTGTTACGTTGCGCTCATAGGGATATTCATTAGCATGTACTTTAGTTCACGTTCTATGTCCGCCCGACCTAACGATCAACCGCATCATATATGTTGCATGTGGGATcattaatattcaattcaattcacctttattagtatagcgcttttacaatgtagattgtgtcaaagcagcttctcaTAGAAGATTATAATGAACTGAAACcgtgtcagttcagtttaatgctgcgttcacaccagacgcgccacgcgcgagtgatttacatgttaagtcaatgcaaatgcgcgaatagacatcctgcggtgcgatacgcgcgaatgacgcaaattgcgcgaatggcacggggcgaattgagcgttttgcgcatttgacgcgcttaacgagcatTTCGGGCGGATATCTCgttttcgaaaatctgaacttcagcgtacattcgcgccgcgttaaccaatcagaagcttgctcttgtgggggcgtgattgtgacgtagaacctgttgtcggtgttccgagggaaatcctccagccttcaccgacaacagttcatcaaactgggcttggctcagtcagaagcaccgctgaaagcctccgtcatccaggctcagtttctggaggagtttatgagctcacagagctggatgcacctctgaaagaatgtagtggactcagacacgaccctaaacgtatcgacgctgtttttcagtctccataaagcacataaacactgttattttcttcataaaatccatgttagccatttagctatgaagctagagtcttcgggtagacagaagccctgcccatcacgcgaatccgcgtctgttctgatgtgaatttgacacgcgaatgaagcggggtttgacgcacgtatgaagcggggtttgacgcacgtatgaagcgagtaaactcaaatgttcacgtgactatttacacgcgaatagctcgatttatccgcgcgttctgcgtctggtgtgaacacagcattagaggttcagttcagtttagtttggtGTGGTTTAacaatcactactgagagtccaaacactgaagagcaaatccttccatgcgcagctctacagatcccgaaccatgcaagccagtggcgacagcggagaggaaaaaacttcaccaatcggcgaaagtgaagaataaaaacctcaagagaaaccaggctcagttggtcaCGACCATTTCatctctggccaaacgtcttgtgctgcagtctaggcaccagagcctggaagctggacctcagcgagactcgtctgtccctggagcgtcacaggaatcaagaccaagaccaccacagcagctgctcaggattcagcctggtccaggatatgtaaaccttgggatcatctcgttgctggtcttggatcgaatcagtggcgctgcataatctaagggcctcaggatgagtatccccggGCTGCACTTACTATCTTTctggaacttttattttgaaaatggtaGACACAGCAAAAATGCCAACCGCACTATATTGTTTTCTATGCGTTGTACTGCATCTGTTCAAGTGCGTCAGattgcaaaatgcaggatatatagATTACACATATATTCAGCTCCGCTCCAAAGAGGgtttaatgtttgtttaattgtatgGTTTCCTAATTTGTGTTTATTGTGGAGTTTGATGCATATTTTTCAGCAAACACACAGACTGTTGAGTGTAAATGCACGTTTAAGTATTGTATCAATCGTTCTGATCTTACTGTCATTTTTCTGAAGAGACATAACAGATATGCACTCTATTAAACGTCTTCTGTTTATGCAGAGAggggggcgcagtaggtagtgcagttgcgtcacagcaagaaggtcgctggtttgagcctcggctgggtcacttggcgtttctgtgtggagtttgcatgttctcactgtgttcgtgtgggtttcctccgggtgctccagttacctccacagtccaaagacatgcggtacaggtgaattgggtaggcttaattgtacatagtgagtgtgtatggatgtaccccagagatgggttgcagctggaagggcatcctctgcgtaaaacatgtgctggataagttggcaattcattccgctgtggcgaccccggattaataaagggactaagctgaaaagaaaatggatgaatgtttATGCAGAGGTTAATATTGATTCCTGGTTGTGTTTTCATTTacaatttaacattaaattacagcacgatacatctctgtctgtctcttttgACGCGTTTAATTGTAATTTAGCCCTTATTTTGTCCACAACTTGCAAAATAGGTTATTGAGATGGGTTTACACTAGGTAGTTCACTCACTTGTAGCTAAAATAAATCTCTCCACCACTTAAATGCAAACGAAGTGAGTCGTCATCTCcatttgttaaaatgtatttaataaattaagtatGATTActaggcgtcatggtggcgcagtgagtagcacgattgcctcacagcaagaaggttgctggttcgagccttggcagggtcaattggcatttctgtgtggagtttgcatgttctccctgtgggtttcctctaggtgctccggtttcccccacaagtccaaaggcatgcgatacaggtgaattgggtaagctaaaattgttcgtagtgtatgtgtgtgaatgagtgtatgggttgcagctggaagggaatccactgtgtaaaattatgctggataagttggcggttcattccgctgtggcgaccctggattaataaagggacaaagctgaaaagaaaatttgtttatttcagcGCACAACATGCAGTATGCATCAAAgcggagctcattaatattcacgaccattccaaatatggtcaatatggaGCTTTTGATGCGGGGTGTATTTTTATGTGGTAATAAATGAGCATGTAAAACATTTCTGtatattgttttttaaacttGCCTAATGCACATGCGgagattaatttaattagttgAATTAATGCAGTTTATGGCACCTTTAAAGAGAAAGAAAATTATAAAGTAGTGCAAAAATATGCAGtcaatgatgacaaaaaaaaacaaaacaaaagctaaatCTCCTGACATTTTAGGATATTTACTTACCCTGACTGTGCACATTTTTTTAAGTGCCCAAAAGAAGACGTATGGTCACCTAatctaaattttttattattgtaggcCTATATAACTTGGCTTTATGACTTAATAGTTATGCAAATTAAATACAAAGCTTGTTTGTTATATATAATGCTGAATTTTCTTATGTGGATTCATAACCTGTAATTGTTAtcttttattaattatgtttttaacatgtacATATTGTAGCCTGCCAGTTCAGAAAAAAATAAGCTTTACTTTTGAGTAAAGTGATTAATTAActtgttttttaattatgtattaatctgatt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000115737

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039810 True 4474 mRNA 0.43 2 1560991 1567970

Neighbor

gene id symbol gene type direction distance location
XLOC_019960 si:ch211-255f4.8 coding upstream 3218 1556948 ~ 1557773 (+)
XLOC_019959 si:ch211-255f4.7 coding upstream 5625 1539373 ~ 1555366 (+)
XLOC_019957 si:ch211-255f4.5 coding upstream 36316 1517318 ~ 1524675 (+)
XLOC_019954 si:ch211-255f4.2 coding upstream 45971 1480988 ~ 1515020 (+)
XLOC_019962 si:ch211-255f4.9 coding downstream 336 1568306 ~ 1569034 (+)
XLOC_019963 AL954741.1 coding downstream 8893 1576863 ~ 1577746 (+)
XLOC_019964 si:ch211-255f4.11 coding downstream 18090 1586060 ~ 1586524 (+)
XLOC_019965 si:ch211-255f4.11 coding downstream 21437 1589407 ~ 1594151 (+)
XLOC_019966 znf1183 coding downstream 42213 1610183 ~ 1613586 (+)
XLOC_019947 BX322657.1 non-coding upstream 176922 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 196130 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 293171 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 622164 923511 ~ 938827 (+)
XLOC_019924 NA non-coding upstream 743364 811600 ~ 817627 (+)
XLOC_019970 BX649416.2 non-coding downstream 82158 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 92217 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 157598 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 310177 1878147 ~ 1880670 (+)

Expression


Co-expression Network