G13833


Basic Information

Item Value
gene id G13833
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15238572 ~ 15239615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU16336
cacatacacacacacacacacatacacactcattagacatagagttgaagtcagaagcttacatacacctgagctaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtaaaagttccCTATCTTAAGtcacttaggatcaccactttattttaagaacgtgaaatgtcagaataatagtagagtgatttatttcagcttttatttcattcatcacattcccagtgggtcagaagtttacatacactcaattactatttggtagcattgcctttaaattgtttaacttgggtcaaacgtttcaggtagacttccaaaagcttcccacaataagttgggtgaattttggcctattcctcctggtgtaacagagtcaggtttgtaggcctccttgttcgcacacgctttttcagttctgcccacaaattttctataggattgaggtcagagccttgtgatggccactccaataccttgactttgttgtccttaagccattattccacaactttggaagtatgcttggggccattgtttatttggaagacccatttgcgaccaagctttaactgatgtcttgagatgttgcttcaatatatccacctaatttcctccctcatgatgccatctattttggtagagatggtgttcttcggcttgcaagcctccccctttttcctccaaacataacgatggtcattgtggccaaacagttctatttttgtttcatcagaccagaggacatttctccaaaaagtacgatctttgtccccatgtgcagttgcaaaccgtagtccggcttttttatggcggttttggagcagtggcatcttccttgctgaacggccatTCAGGtcatgtggatatagatacttttgtacctgtttcctccagcatcttcacaaggtcctttgctgttgttctaggattgatttgcactttttgccccaaagtacattcatctctaggagacagaacgcgtctccttcctgagcggtatgacggctgcacggtcccatggtgttcatac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16336 True 1044 lncRNA 0.45 1 15238572 15239615

Neighbor

gene id symbol gene type direction distance location
LOC110488261 antithrombin coding upstream 67157 15163316 ~ 15171415 (+)
LOC110488062 LOC106613585 coding upstream 79100 15130526 ~ 15159472 (+)
LOC110529430 LOC106574078 coding upstream 112570 15117850 ~ 15126002 (+)
LOC110487930 LOC106574072 coding upstream 158268 15075184 ~ 15080304 (+)
elav1 elav1 coding upstream 212037 15024419 ~ 15026535 (+)
LOC110489303 dbt coding downstream 185507 15425122 ~ 15432764 (+)
LOC118966767 NA coding downstream 191894 15431509 ~ 15431641 (+)
lrrc39 lrrc39 coding downstream 193474 15433089 ~ 15437025 (+)
sass6 sass6 coding downstream 207843 15447458 ~ 15468011 (+)
LOC110489630 LOC106573979 coding downstream 269147 15508762 ~ 15521789 (+)
LOC110529632 dph5 non-coding upstream 364 15192649 ~ 15241166 (+)
G13827 NA non-coding upstream 7057 15230998 ~ 15231515 (+)
G13823 NA non-coding upstream 9693 15228631 ~ 15228879 (+)
G13820 NA non-coding upstream 12635 15225727 ~ 15225937 (+)
G13807 NA non-coding upstream 40118 15198132 ~ 15198454 (+)
G13835 NA non-coding downstream 1976 15241591 ~ 15242242 (+)
G13856 slc30a7 non-coding downstream 29555 15269170 ~ 15272921 (+)
G13863 NA non-coding downstream 41547 15281162 ~ 15281420 (+)
G13865 NA non-coding downstream 43044 15282659 ~ 15282863 (+)
G13890 NA non-coding downstream 77697 15317312 ~ 15323968 (+)
G13639 NA other upstream 276569 14961554 ~ 14962003 (+)
G13434 NA other upstream 425948 14811771 ~ 14812624 (+)
G13391 NA other upstream 537842 14700176 ~ 14700730 (+)
G13381 NA other upstream 558545 14679698 ~ 14680027 (+)
G13380 NA other upstream 558994 14679350 ~ 14679578 (+)
LOC110490510 LOC106573976 other downstream 455426 15694810 ~ 15716774 (+)
LOC118941201 NA other downstream 1339471 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1676884 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1723442 16962997 ~ 16967790 (+)

Expression


Co-expression Network