XLOC_019964 (si:ch211-255f4.11)


Basic Information

Item Value
gene id XLOC_019964
gene name si:ch211-255f4.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1586060 ~ 1586524 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039813
CTCTGCCGCCATcagacaaagacagagtttattaaaggacagtgagaagatgagtgatccagaaccctgcacaattaaacaggaagagactgaagcACAAAtagATGTGATCCTGGAGGAGGAGAGTGAAGCactgagtgaagatgaggagaaacatcatgtcaaaagtAAAAACTGAAACTCA

Function

symbol description
si:ch211-255f4.11 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117185

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039813 True 184 mRNA 0.42 2 1586060 1586524

Neighbor

gene id symbol gene type direction distance location
XLOC_019963 AL954741.1 coding upstream 8314 1576863 ~ 1577746 (+)
XLOC_019962 si:ch211-255f4.9 coding upstream 17026 1568306 ~ 1569034 (+)
XLOC_019961 AL954741.2 coding upstream 18090 1560991 ~ 1567970 (+)
XLOC_019960 si:ch211-255f4.8 coding upstream 28287 1556948 ~ 1557773 (+)
XLOC_019959 si:ch211-255f4.7 coding upstream 30694 1539373 ~ 1555366 (+)
XLOC_019965 si:ch211-255f4.11 coding downstream 2883 1589407 ~ 1594151 (+)
XLOC_019966 znf1183 coding downstream 23659 1610183 ~ 1613586 (+)
XLOC_019967 si:ch211-255f4.13 coding downstream 29167 1615691 ~ 1619230 (+)
XLOC_019968 si:dkey-1b17.1 coding downstream 44162 1630686 ~ 1633473 (+)
XLOC_019969 si:dkey-1b17.2 coding downstream 55023 1641547 ~ 1644006 (+)
XLOC_019947 BX322657.1 non-coding upstream 201991 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 221199 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 318240 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 647233 923511 ~ 938827 (+)
XLOC_019970 BX649416.2 non-coding downstream 63604 1650128 ~ 1653938 (+)
XLOC_019971 NA non-coding downstream 73663 1660187 ~ 1665471 (+)
XLOC_019977 BX649416.3 non-coding downstream 139044 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 291623 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 420717 2007241 ~ 2290657 (+)

Expression


Co-expression Network