XLOC_019966 (znf1183)


Basic Information

Item Value
gene id XLOC_019966
gene name znf1183
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1610183 ~ 1613586 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039815
ATGACGTCAGCACTGACGCGTTCattcagcgtcgagtcttcagagctgagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagaggcTGAAggactaatag
>TCONS_00039816
ATGACGTCAGCACTGACGCGTTCattcagcgtcgagtcttcagagctgagATCTGCCGTcatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagaggcTGAAggactaatagACCTTAGTGAAGACGTGAAAGTCCACCCTAATGTTCAAACCAAGATGTTTTTATGCCCTTTTTGTGGAAAGAGTTACAATCGTCAAGACAAATTCAGAAAGCATCAGAgcactcacactggagagaaaccgtacaagtgttcacactgctaCAAGCCATTCAGTCAGCCAGAGTATCTGAGAAAACAtgagaggatccacactggagagaaaccgtacaagtgttcacactgcgacaagagattcagctTGTTAAAAACcatgaaaacacatgagaggatccacactggagagaaaccattcacatgtaccgAGTGTGGGACGAGTTTCTCACAgttatcacaccttaatcaacacatgaggatccacactggagagaaaccacacGAATGTGATCAATGCGGCAAGACGTTTTCAAGGCTTCCAGAtctgaagaaacatcttagaGTCCATACAAACGAAAAGCCGTACTCATgttctgagtgtggaaagagttttatgtggcaaacaagcttaaaattacatcagaagatccacactggtgtgagagagttcGACTGCTTAGAGTGtgggaagacttttattacagtcGGAGACTTGAAAcgacaccagaggattcacaccggagagaaaccgtacgtgtgttcacactgcaacCAGACTTTCAGACATTCAGGAAATCTGAAATCGCATGAGATGATTCACGCTGGAGAGTTTCACGCAGTTATCATACCTTAA

Function

symbol description
znf1183 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100808

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039815 False 145 mRNA 0.46 2 1610183 1610782
TCONS_00039816 True 897 mRNA 0.44 3 1610183 1613586

Neighbor

gene id symbol gene type direction distance location
XLOC_019958 znf1183 coding upstream 3871 1526040 ~ 1606312 (+)
XLOC_019965 si:ch211-255f4.11 coding upstream 16032 1589407 ~ 1594151 (+)
XLOC_019964 si:ch211-255f4.11 coding upstream 23659 1586060 ~ 1586524 (+)
XLOC_019963 AL954741.1 coding upstream 32437 1576863 ~ 1577746 (+)
XLOC_019962 si:ch211-255f4.9 coding upstream 41149 1568306 ~ 1569034 (+)
XLOC_019967 si:ch211-255f4.13 coding downstream 2105 1615691 ~ 1619230 (+)
XLOC_019968 si:dkey-1b17.1 coding downstream 17100 1630686 ~ 1633473 (+)
XLOC_019969 si:dkey-1b17.2 coding downstream 27961 1641547 ~ 1644006 (+)
XLOC_019970 BX649416.2 coding downstream 36542 1650128 ~ 1653938 (+)
XLOC_019971 NA coding downstream 46601 1660187 ~ 1665471 (+)
XLOC_019947 BX322657.1 non-coding upstream 226114 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 245322 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 342363 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 671356 923511 ~ 938827 (+)
XLOC_019977 BX649416.3 non-coding downstream 111982 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 264561 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 393655 2007241 ~ 2290657 (+)

Expression


Co-expression Network