G15454 (LOC106573918)


Basic Information

Item Value
gene id G15454
gene name LOC106573918
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16485486 ~ 16486747 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU18141
CTTTTCGATGATGTTACCACCTtctgttaaaaaaataataatcataataacatgcacaataaacaaatacacattAAAGAGAGAAGAGAATTGATTCTACACTCACCTTCCACTTTATACACCTCACACTCAGTTAGGTTAAGGTTATTGCCatgcatttctgcagcattgaagatgtAGTAGTTTCCTGGAATGCTGATCACTGTAGCTGTGTTAGCGTTCATTAACAGCAAATCCTCCCCAAAGTAAGGGCCAGTTGTGTTATGCATTTTGACCGCATATTGGGCATTTGTGACGGGATACCTGACAGGATTTCTACCAGTTAAACTAAACAAAAAGGCTTTGTCATCCTGTATGTACTGGCCTTGCTTGGCTACGTCATAATCTTTACTTGTGTAGCCTCCAAAAACAAACCCTGTGGAGTTATATCCTACAGAGACTGTGGGACCTTGGTGGTCACATTTCTGGTGAAAGGCTGCTCCTGTGTAGCCATGTATACTGGCCTTGAACAGCAGGCTGAGTTTGATGTTTCCCAGTAAGGAACACAGCTGTTTCTCCTGTTCCTGGGTCAGTTTGGGGTTCATGGTGGGGATCACGTTGGTCTCAGTAGGGGTAGTttGCTGTGCTATTTCGTTGTTCAGTCGTTTTATTATCAACCAGAGTTACATCATatatgtcaagcagtgaagtttcagctctgtctgtccgtggccactcttcctcggtgcgcactgtccctgtgtccgtttccatcttgtccagttgtgtatgtaacatttcacgtaaaccctgtttcttgtctgaatcgaagtagcggtccttgcaCAT

Function

NR:

description
interferon-induced protein 44-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18141 True 828 lncRNA 0.41 2 16485486 16486747

Neighbor

gene id symbol gene type direction distance location
LOC110491485 LOC106573921 coding downstream 52877 16426112 ~ 16432609 (-)
LOC110531543 NA coding downstream 69844 16339247 ~ 16415642 (-)
LOC118941184 NA coding downstream 149668 16319755 ~ 16335818 (-)
LOC110531395 LOC106613616 coding downstream 189959 16181514 ~ 16295527 (-)
LOC110491230 med16 coding downstream 327677 16149712 ~ 16157809 (-)
LOC118966506 NA coding upstream 110062 16596809 ~ 16601637 (-)
LOC118941208 LOC106573916 coding upstream 118626 16605373 ~ 16608827 (-)
LOC118941412 LOC106573916 coding upstream 236484 16723231 ~ 16726607 (-)
LOC110492040 arrdc2 coding upstream 317883 16804630 ~ 16814764 (-)
LOC110492105 homer3 coding upstream 351388 16838135 ~ 16871992 (-)
G15457 NA non-coding downstream 20233 16458862 ~ 16465253 (-)
G15452 NA non-coding downstream 32682 16452605 ~ 16452804 (-)
G15451 NA non-coding downstream 34754 16450517 ~ 16450732 (-)
G15364 NA non-coding downstream 81069 16404100 ~ 16404417 (-)
G15363 NA non-coding downstream 81663 16403561 ~ 16403823 (-)
G15481 NA non-coding upstream 93063 16579810 ~ 16592967 (-)
G15491 NA non-coding upstream 187446 16674193 ~ 16682680 (-)
G15510 NA non-coding upstream 285858 16772605 ~ 16772823 (-)
G15516 NA non-coding upstream 289457 16776204 ~ 16776416 (-)
G15521 NA non-coding upstream 294261 16781008 ~ 16781244 (-)
LOC110488740 cdc14a other downstream 1144605 15325555 ~ 15394233 (-)
LOC110488330 LOC106613586 other downstream 1301944 15175297 ~ 15183693 (-)
G14120 antithrombin other downstream 1311456 15114926 ~ 15174030 (-)
LOC110487385 LOC106574065 other downstream 1526218 14955950 ~ 14959313 (-)
G15470 NA other upstream 44300 16531047 ~ 16531476 (-)
G16100 LOC106573897 other upstream 644673 17131420 ~ 17136357 (-)
G16161 LOC106573901 other upstream 768489 17255236 ~ 17257241 (-)
LOC110497564 LOC106573866 other upstream 1603133 18089520 ~ 18098678 (-)

Expression


Co-expression Network