G15421


Basic Information

Item Value
gene id G15421
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16723873 ~ 16725578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU18106
CACAAGTCAGTCAAGGATGTTCATACAGGGTGGTTAAATGTCAGATGTTCCGATAGCTGATGTTCCAATAGCTAACTAAAACGTCAATAAAGGGTATTATTGAGAATACCGTCTGCTGAACGATCCGACTGTTGTACACCTGGGTGATGTCACGGGCAGTTTCCTGACACACCTGGTCCACGTGTGTCAGCAGTGCCACTTGATGCACACCTACAAAACACATTTGTTTcacacactgtcaactgacaGAATTGACCACAGTCCCTACAACCATTACTTCCATTGCGAAAAAGCTTCTTGTATTGCTCACCCAGGTCACTGATGTGTTCTCGGAGCTGTTGGAAGGTGGTGCCCAGACCTTTGGTGTAGCTGGACACTTTAGAAGCATCCACCACAAAGACGACACAGTGGACCTTGTCTTTAAGGGACGGCTTCTTTACATACCCCACAGTCTCTGATCTCACAGGCTGCTCAGGACTGAACTGTAGAGGATGGATGAGAACATTAGCTTGGTTGTtcaaaccaaccagctgagagagTATTTATAATATTCTCTACTGAACAGAGAAATGTATATCAGGGGTGAGCAACTCCTATCTTGTGAGGCTGCCTGCATGAGTATGTTCCAACCCAGCACTATCTCACCTGAATCATAATAGTGGTCTAAATTGCAGACtgtgattagttgaatcaggtgtgttagaacTAAACTGGAACAAAAATCGGCACACACTGTGTGTTAGAGCAGACCTGGAACACACTGTGGCCGCTGTTGCTCAACTCCGAGTTATATGAATGTTACACACACTGTGCCCCTGTAATTTTAACGTCGACATCCAATACTTGCATTCTTTCTTACACACAACGGTGGCACCTGTGTCCTTTCTCCCTCACGTACCTTGTGTCCCTCGGGTGCATGGCCTTTGATGATAGCCAGAGTGTCATGGAGGGTTAGTCCAGTGGTCTCCCCATCTCCCAGACCCATGACATCACACAGGACCAGCGCAGTAGGCTGCTCTGGACTCCGCCCACGGATGTTGAACAACTGGAGCTTTTGGTGAAGCTGGCAGAGGAAGAGCCAACCATGGCCCGGTTAGTGAATCTTCCTGTGAAGACTGACTGAACAGAGCTGATGAAGCTGGACTTGCCGGCTCCGACAGGACCCAGCAGCAGAACCCGAGCCTCAGACAAAGCCTCAAAACCAGGCTTATAGGAACTGATAGACTCCATCAGGGTCTCCCTGCGACTGGGCAAACATTGGTCATTAACAATTAAATATAATTACATGGTGGATTGTTTAGTAGGCCTAGTTGGTGTACATAGGTAAGTGTGAGTGTATTGTTGTGATACCCTACTCACTCCTCAGTCCATGCCACCTCCCTCCATGGGGACTCCATCTTACTTTTCCACTGTTCTGCCCCTAGCAGGCCTAGAGTTGAGAGAGTATAGTGTAAGAGCAAACTAATGAAAATCATGAATTATCAGGTAAGTGTAGTCTACTGGAAAGTGG

Function

NR:

description
interferon-induced protein 44-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18106 True 1510 lncRNA 0.33 2 16723873 16725578

Neighbor

gene id symbol gene type direction distance location
LOC110491738 NA coding upstream 14188 16695732 ~ 16709685 (+)
LOC118941333 NA coding upstream 45033 16672236 ~ 16678840 (+)
LOC118941290 NA coding upstream 99675 16612600 ~ 16624198 (+)
LOC118941201 NA coding upstream 130906 16578956 ~ 16592967 (+)
LOC118941197 NA coding upstream 161689 16555492 ~ 16562184 (+)
LOC118941434 NA coding downstream 4823 16730401 ~ 16751454 (+)
LOC100135798 LOC100135798 coding downstream 100442 16826020 ~ 16827539 (+)
ddx49 ddx49 coding downstream 150118 16875696 ~ 16885634 (+)
LOC110492606 LOC106573909 coding downstream 190904 16916482 ~ 16920945 (+)
LOC110492686 LOC106573907 coding downstream 207810 16933335 ~ 16935884 (+)
G15418 NA non-coding upstream 109219 16613574 ~ 16614654 (+)
G15391 LOC106581772 non-coding upstream 211220 16512426 ~ 16512653 (+)
G15384 NA non-coding upstream 283838 16439823 ~ 16440035 (+)
G15372 NA non-coding upstream 304854 16418405 ~ 16419019 (+)
G15374 NA non-coding upstream 306445 16417221 ~ 16417428 (+)
G15438 NA non-coding downstream 18270 16743848 ~ 16748780 (+)
G15502 NA non-coding downstream 37371 16762949 ~ 16763209 (+)
G15519 NA non-coding downstream 54761 16780339 ~ 16780597 (+)
G15536 NA non-coding downstream 70745 16796323 ~ 16796597 (+)
G15538 NA non-coding downstream 71734 16797312 ~ 16797600 (+)
LOC110490510 LOC106573976 other upstream 1008191 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1255885 15447458 ~ 15468011 (+)
G13639 NA other upstream 1761870 14961554 ~ 14962003 (+)
G13434 NA other upstream 1911249 14811771 ~ 14812624 (+)
LOC110492876 LOC106613263 other downstream 237479 16962997 ~ 16967790 (+)
LOC110495874 LOC106573877 other downstream 928629 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 1250386 17975918 ~ 17991176 (+)
G17420 NA other downstream 2157145 18882723 ~ 18956208 (+)

Expression


Co-expression Network