G15538


Basic Information

Item Value
gene id G15538
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16797312 ~ 16797600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU18234
CGGGTCCCCAGTCTGACACAATAATGAGAGCACAAGGCTGTTTGTGTCTATTGCATGTTTATCGACTGACGTATGTGATAGTAGCACTGACCATTCAATATATTTGCTTGAATGGATATTCTCCACTGATCATTCATTGGGCAGGCCTATATTTGCTTGGGTGGAGGCCAGCTTGCTTAACCCTGCAGATATTTATGGTGTAAATTTGCACTATTTGACATAATTTATTTTATTCTATATATGGTGTGCTGATGTCAACACGCAGCAATTGAGAACAAATGTCAAAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18234 True 289 lncRNA 0.40 1 16797312 16797600

Neighbor

gene id symbol gene type direction distance location
LOC118941434 NA coding upstream 45858 16730401 ~ 16751454 (+)
LOC110491738 NA coding upstream 87627 16695732 ~ 16709685 (+)
LOC118941333 NA coding upstream 118472 16672236 ~ 16678840 (+)
LOC118941290 NA coding upstream 173114 16612600 ~ 16624198 (+)
LOC118941201 NA coding upstream 204345 16578956 ~ 16592967 (+)
LOC100135798 LOC100135798 coding downstream 28420 16826020 ~ 16827539 (+)
ddx49 ddx49 coding downstream 78096 16875696 ~ 16885634 (+)
LOC110492606 LOC106573909 coding downstream 118882 16916482 ~ 16920945 (+)
LOC110492686 LOC106573907 coding downstream 135788 16933335 ~ 16935884 (+)
LOC110492876 LOC106613263 coding downstream 165397 16962997 ~ 16967790 (+)
G15536 NA non-coding upstream 715 16796323 ~ 16796597 (+)
G15519 NA non-coding upstream 16715 16780339 ~ 16780597 (+)
G15502 NA non-coding upstream 34103 16762949 ~ 16763209 (+)
G15438 NA non-coding upstream 48532 16743848 ~ 16748780 (+)
G15421 NA non-coding upstream 71734 16723873 ~ 16725578 (+)
G15552 NA non-coding downstream 36270 16833870 ~ 16834176 (+)
G15563 NA non-coding downstream 57585 16855185 ~ 16855466 (+)
G15564 NA non-coding downstream 57875 16855475 ~ 16855706 (+)
G15630 NA non-coding downstream 76429 16874029 ~ 16874252 (+)
G15655 NA non-coding downstream 107519 16905119 ~ 16905322 (+)
LOC110490510 LOC106573976 other upstream 1081630 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1329324 15447458 ~ 15468011 (+)
G13639 NA other upstream 1835309 14961554 ~ 14962003 (+)
G13434 NA other upstream 1984688 14811771 ~ 14812624 (+)
LOC110495874 LOC106573877 other downstream 856607 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 1178364 17975918 ~ 17991176 (+)
G17420 NA other downstream 2085123 18882723 ~ 18956208 (+)

Expression


Co-expression Network