XLOC_019970 (BX649416.2)


Basic Information

Item Value
gene id XLOC_019970
gene name BX649416.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1650128 ~ 1653938 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039821
GACGCGTTCattcagcgtcgagtcttcagagctgaggtgagtctttgacgctttttctcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagagaggagctctgagaggacaatatgagtgaatTGTAGATGAATCACATTTCTCTGTTTGTTCTCCTGAAGCTCTGCCGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagGTGTGCGtgtgaaggaggagagtgaagaactgagtGAGGATGAGGAGAAACATCAAATCAAAAGTGAAACTGAAACTCACACAAACGGTGAACAGAGTGTTCCGGTGAACCAAACAGCCGTGAAAaaattcacctgcactcagtgtggaaagagctttggCTACAAAACCACTTACCAGCATCActtgaagatccacactggagagaagccgtacgAGTGTTCATACTGCGACATGAGATTCATACGGCCTTCAGATCTGAAAACCCATGAGCggactcacaccggagagaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104479

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039821 True 651 processed_transcript 0.44 3 1650128 1653938

Neighbor

gene id symbol gene type direction distance location
XLOC_019969 si:dkey-1b17.2 coding upstream 6122 1641547 ~ 1644006 (+)
XLOC_019968 si:dkey-1b17.1 coding upstream 16655 1630686 ~ 1633473 (+)
XLOC_019967 si:ch211-255f4.13 coding upstream 30898 1615691 ~ 1619230 (+)
XLOC_019966 znf1183 coding upstream 36542 1610183 ~ 1613586 (+)
XLOC_019965 si:ch211-255f4.11 coding upstream 55977 1589407 ~ 1594151 (+)
XLOC_019971 NA coding downstream 6249 1660187 ~ 1665471 (+)
XLOC_019972 si:dkey-1b17.5 coding downstream 14533 1668471 ~ 1675510 (+)
XLOC_019973 si:dkey-1b17.6 coding downstream 26690 1680628 ~ 1687170 (+)
XLOC_019974 znf1160 coding downstream 37355 1691293 ~ 1698178 (+)
XLOC_019975 znf1154 coding downstream 46614 1700552 ~ 1704666 (+)
XLOC_019963 AL954741.1 non-coding upstream 72382 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 266059 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 285267 1316752 ~ 1364861 (+)
XLOC_019938 CU570769.1 non-coding upstream 382308 1249788 ~ 1267820 (+)
XLOC_019927 NA non-coding upstream 711301 923511 ~ 938827 (+)
XLOC_019977 BX649416.3 non-coding downstream 71630 1725568 ~ 1732110 (+)
XLOC_019991 BX640576.1 non-coding downstream 224209 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 353303 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 506101 2160039 ~ 2163446 (+)
XLOC_019958 znf1183 coding upstream 43816 1526040 ~ 1606312 (+)

Expression


Co-expression Network