G16209 (LOC106573893)


Basic Information

Item Value
gene id G16209
gene name LOC106573893
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17344408 ~ 17347869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU19003
TGCATTTCAGAGTAAAGGTTTATTATACAGAAATAGGTTATAGATGTGACAAAAGTACACAACGATGAATTGAAGTCTGACTGCTGGTAACATCAGAAGGCCTATGTaagaaacacatcaaacatgtctAAAATGGTTGGAGATTTACATATTTTCTCATTGTATTCACAAGTTTTAGAAGAAAATGAGGACTATAACAGGTCAGCAACCCAAATAAGATAGTAAAAGCCTGAAAGGAACAGAAAATTATGAAGAGAACAGCCAAGAGTCAAATGTTTCGTATATTCACAGTTGAATAAACATGGAGGTCCAAATATAACATGTACAAATGTGTTTTAACTAACTTATACATGTAGTAGTAAGTGTTATTGTGCAGAATAATCTGCTTACTGAAAATTACAGGCAAGACATTGAGATATATTAATACAAGGTAAATGCACAGAATGGTCACAGGATCTGACACAAGAGCAACCCATCAAAGTATCAACTCGAAAAATATTTAATATTTGTTTAATTTTTCAGCAGGGGTCCCCAATCCAACAAGGAAGTTGATCATGATCCAAACAAGAATCATGCAAAACATCATGAAGATGTTCCATAAGGCAATGAAGATCCGGAAGTAACGTAGACTCAGGAGGAACTCCCTGATGTTGTCACCTGTAGTTGGTCCACGAGGTTCATCTCCAAATCCTCCATgtgtctcctttctctttAGTTTGAAGTTTAACACAGCACCAGCATTCATGAGTAAGGTCCCGAATATCAAGAGATCCCCGATCATTTTGTCCACATCAGAGGCGCTATAACTTCCGTAAACGTCATCAAAATAGTGTCAAAAGGCTGAAGGGAAATCCTGGGTTATGTTCAGTAGAGAAAACGTTTTGAAGAGAAAGCCACATTAGAAATATGATCAATCACGttgggcaggggtgtcaaactcattccatggagggcctaggtttttttt

Function

NR:

description
small integral membrane protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19003 True 967 lncRNA 0.55 5 17344408 17347869

Neighbor

gene id symbol gene type direction distance location
LOC110494221 LOC100194656 coding downstream 858 17329927 ~ 17343550 (-)
comp LOC106573894 coding downstream 17649 17314484 ~ 17326759 (-)
LOC110493215 LOC106573896 coding downstream 123451 17173402 ~ 17220957 (-)
LOC110493506 LOC106573900 coding downstream 171201 17140522 ~ 17173207 (-)
LOC110493631 LOC106573903 coding downstream 204016 17137016 ~ 17140392 (-)
LOC118942066 NA coding upstream 15030 17362899 ~ 17365492 (-)
LOC110531963 LOC106573889 coding upstream 43027 17390896 ~ 17392469 (-)
LOC118942412 NA coding upstream 80408 17428277 ~ 17436513 (-)
LOC110495007 NA coding upstream 168798 17516667 ~ 17518593 (-)
LOC110531970 LOC106573879 coding upstream 253843 17601712 ~ 17619924 (-)
G16208 NA non-coding downstream 31 17344111 ~ 17344377 (-)
G16207 NA non-coding downstream 5530 17335199 ~ 17338878 (-)
G16194 NA non-coding downstream 30510 17311287 ~ 17313898 (-)
G16193 NA non-coding downstream 35624 17308575 ~ 17308784 (-)
G16192 NA non-coding downstream 36421 17307780 ~ 17307987 (-)
G16216 LOC106573893 non-coding upstream 6533 17354402 ~ 17356978 (-)
G16218 NA non-coding upstream 12647 17360516 ~ 17360773 (-)
G16220 NA non-coding upstream 14463 17362332 ~ 17362549 (-)
G16228 NA non-coding upstream 29886 17377755 ~ 17378361 (-)
G16271 NA non-coding upstream 100041 17447910 ~ 17448363 (-)
G16161 LOC106573901 other downstream 87167 17255236 ~ 17257241 (-)
G16100 LOC106573897 other downstream 208051 17131420 ~ 17136357 (-)
LOC110492105 homer3 other downstream 472480 16838135 ~ 16871992 (-)
G15470 NA other downstream 812932 16531047 ~ 16531476 (-)
LOC110531395 LOC106613616 other downstream 1128112 16181514 ~ 16295527 (-)
LOC110497564 LOC106573866 other upstream 742011 18089520 ~ 18098678 (-)
LOC110497762 LOC106573859 other upstream 1042254 18390123 ~ 18450517 (-)
mydgf LOC106573827 other upstream 1529008 18876547 ~ 18888907 (-)
LOC110502937 ccl25 other upstream 2282624 19630376 ~ 19633058 (-)
G20266 NA other upstream 3451251 20799120 ~ 20800008 (-)

Expression


Co-expression Network