G15943 (LOC106581475)


Basic Information

Item Value
gene id G15943
gene name LOC106581475
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17361082 ~ 17361410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU18696
actcttggacagtctgtggtgcaatggaggatggagcgagacatgatgtcccagatgtgctctattggattcaggtctggggaacgggcgggccagtccatagcatcaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtctagcattttcttgcattaggaggaacccagggccaaccgcaccagcatatggtctcacaaggggtctgaggatctcctctcagtacctaatggcagtcaggctacctctggcgagcacatggagggctgtgcggccccccaaaagaaatgccaccccacaccatgactgacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18696 True 329 lncRNA 0.50 1 17361082 17361410

Neighbor

gene id symbol gene type direction distance location
LOC110494277 LOC106573893 coding upstream 4103 17348448 ~ 17356979 (+)
smim7 LOC106573893 coding upstream 13212 17344382 ~ 17347870 (+)
LOC110494078 LOC106573895 coding upstream 47156 17273600 ~ 17313926 (+)
klhl26 LOC106573902 coding upstream 89032 17263953 ~ 17272050 (+)
LOC110493709 LOC106573901 coding upstream 104822 17244353 ~ 17256260 (+)
slc35e1 LOC106573890 coding downstream 5639 17367049 ~ 17384408 (+)
LOC110494533 LOC106573888 coding downstream 58986 17420396 ~ 17436449 (+)
pex11g pex11g coding downstream 75379 17436789 ~ 17439767 (+)
si:ch73-40i7.5 apba1 coding downstream 80920 17442330 ~ 17456277 (+)
zgc:172302 LOC106573884 coding downstream 106248 17467658 ~ 17516649 (+)
G15942 NA non-coding upstream 976 17359169 ~ 17360106 (+)
G15909 NA non-coding upstream 3029 17357701 ~ 17358053 (+)
G15928 NA non-coding upstream 46112 17314566 ~ 17314970 (+)
G15944 NA non-coding downstream 801 17362211 ~ 17362428 (+)
G15946 NA non-coding downstream 3928 17365338 ~ 17365623 (+)
G16259 NA non-coding downstream 79767 17441177 ~ 17441511 (+)
G16281 NA non-coding downstream 104772 17466182 ~ 17466653 (+)
G16294 NA non-coding downstream 122868 17484278 ~ 17504919 (+)
LOC110492876 LOC106613263 other upstream 393292 16962997 ~ 16967790 (+)
LOC110492606 LOC106573909 other upstream 440673 16916482 ~ 16920945 (+)
LOC118941201 NA other upstream 780200 16578956 ~ 16592967 (+)
LOC110490510 LOC106573976 other upstream 1645400 15694810 ~ 15716774 (+)
sass6 sass6 other upstream 1893094 15447458 ~ 15468011 (+)
LOC110495874 LOC106573877 other downstream 292797 17654164 ~ 17673094 (+)
ccdc124 cc124 other downstream 614554 17975918 ~ 17991176 (+)
G17420 NA other downstream 1521313 18882723 ~ 18956208 (+)
G18481 NA other downstream 2203439 19564849 ~ 19565221 (+)
LOC110502506 LOC106573550 other downstream 2207375 19568684 ~ 19575028 (+)

Expression


Co-expression Network