XLOC_019977 (BX649416.3)


Basic Information

Item Value
gene id XLOC_019977
gene name BX649416.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1725568 ~ 1732110 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039830
gagtcttcagagctgaggtgagtcgttgacgctttttctcgtgtttacacaacaataaaacacactttacagtttattaaagcgacaatctgcgactagtttctgcattgagttcacctctatctgtgtgtctgctgaccaaaacaatacagcaggcagagaggagctctgagaggacaatatgaatttctctTTCTTCTCCTGAAGCTCTGCCGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGATtgtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaaaagtGAAACTGAAACTGAGACCAATGCAGAACACAGTATCTTAATGGAAAGCACAACAGTGAaatgtttcacctgcactcagtgtggaaagagtttcaagcACAAATGCTCTCTCAACGtccacatgaagatccacactggagagaaacgctacaagtgttcacactgcgagaaGAGCTTCATTCATACAGGACATTTAAAACGGCACCAGAGGACTCATAGTAGAGAGAAACCGTTTCATTGCACTgcttgtgggaagagtttcaaacATTTGTGTTCACTGCAAAAACATTCAGTCAAGCTTCACG
>TCONS_00041848
GCTCAGTGAAGTGATGATCAGTGTACCCTGTCAAAAACTCGCCTTTTATAATGTTACTTGCTTATATTTCAGATGTGATtgtgaaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaaaagtGAAACTGAAACTGAGACCAATGCAGAACACAGTATCTTAATGGAAAGCACAACAGTGAaatgtttcacctgcactcagtgtggaaagagtttcaagcACAAATGCTCTCTCAACGtccacatgaagatccacactggagagaaacgctacaagtgttcacactgcgagaaGAGCTTCATTCATACAGGACATTTAAAACGGCACCAGAGGACTCATAGTAGAGAGAAACCGTTTCATTGCACTgcttgtgggaagagtttcaaacATTTGTGTTCACTGCAAAAACATTCAGTCAAGCTTCACGaCCTGATTGTGAAGGAGGAGGTGACTGAAGAACTGACTGAAGACATGAAGGACCACCTTATTGTTCATACAAATGAGAAGATACACTCCTGCTCTtggtgtggaaagagttttataCAGCAGTCGCATTTACGAAAACATCagaggatccacaccggagagaaaccgtgcACGTGTCCTCAGTGTGGCACGAGTTTCACACAATCGTCAAACCTTCTTCGACACatgctgatccacactggagagaaaacacacaagtgTGATCAATGCGGGAAAACATTTTTCAGGCCTTCAGAGCTGACGATCCATCTTAGAGTTCATACCAAGGAGAAGCCTTATTCATgctctgagtgtggaaagagttttacacgGCAGACACACTTAAAATCACATCAGAACGTCCACACTGGcgtgagagagtttgtgtgcttcatgtgtgagaagacttttattagagCTGCGGAGTTAAAGCGTCACATGAGGacccacaccggagagaaaccgtacgtgtgttcacactgcaacaaGAGATTCGGTCAATTAGGGGGTCTGAAAACACAcgagagaattcacactggagagaaaccctacACATGtactgagtgtgggaagagtttctcaCAATTAGCAGGTCTTAATGAACACATGCTGATCCACACTGcagagaaaacacacaagtgTGATCAATGCGGGAAATCATTTTTGAGGCCTTATGAGTTGAACAGACATCTTAGAGTTCATACATAGAACAAGTCTTTGTTAGTAAGAAGTTTTACACATCAACGCAATTCACCTTCCTGAAAACTCTTGTCTGCATTGTCAAAGTCAGATTTCACAGTTAAACTTGTGTATGTTGATGAATTCCAATCatttgttaaagggtcacgaaacaccaaaacacatgtgttgagctgttgacattggtatatgtgtcccacactgctaaaaacactattaggacacctatatttcactaaaaagtgtaaattggttgtttttgcgttatttcaagcaaattcgtacttcctgtttaaaacgaatttttaaagctgcgtcacggtcatgacataatagcgtgtattccagcgtgcagactggacgtctgtgccagagtgagtcttattacgtcttacagtgtgctgcattaatgcatgagtaaggcttggttcaaaccaatcagcgcgctctattgtgcaacttcattaatattcattactgtcacagtgcttagacgacagagacgccacgttgtgttggcaaaacaagcgtgaagtgttgcttttatagtttgctgcagttcagttttgttttcattttctctctgtgagagctcagctggagtcacgtgtggattaacagtgtacgcgacgctcaacaacaataacttacgtgtctaaggaggaacattgtttacctgagagctgttctcatctgcaaacgctgagatccggattcacttgtagtctcctcttaataaagacgcggctctagttgctggtgattgtcctgtctctacagatttggtaagtgagcgaccagtgctctttatttattcagtttgttcgtatcgaactaagttaactattgcaccgagtgtaaacatgttagcaccacaaccaaactttaacctcgtgtagggtttttaccgcatttagtgaccggaataacacacgcggctttctgacactacctgccgtgtgcatctaagtttccgggaaatgcggagggtttttctctcattcgccgtgcggtatcaaacattgcttgaaaaatacacgcttagagcagttcctcaatcaaatatctcgtttgtcgggagggacatgaatgaattccctgaatgaaagagtcaaactgcagttaaagtccaacatttaataatttggcaaataattccactacagatgtccatgtaaacaccatcactttctcccctgcgtgtgtggttgtgtgttttgactctgaaagtcagcgcgtgcccaaatagacactcccacaccatgcctcttttcttcctccgacactcccccctaaacagagctggacacgcccacttttctgactttttccaaagtagaggtgtgaaaacaccctgctgaaacgagggggattcatggccctttaatgggACAACATCTAGCATAACTAGCATAATCCCCACCTGTGTAATCACATGTCCAGCTCTGCAGTGGAATATCCATTGGCTTGACTTCAGTATGTTTGGTAAATGCAGTTAATGCCTAAAAAtgttggtggctcagtggctagcattGTCatctgacagcaagaaggtcgctggttcgagtcccagctgggtcagttggcttttctgtgaggagttgcatgttctcctcatcttggtgtgctccggtttctcccacagtccaaacacatgcgctatatgggaaatgaatgaactaaattggctgtagtgtatgagtgtgtttgggtgtttcccagtactgggttgtagccggaagggcatccgctgtgtaaaacatatgctggaaaagttggcggttcattttgctgtggcgacccctgataaataagggactaagctgacggagaattaataaatgaatgtgtatTGCAATGCACTTTGCTAAATGCTAAAttgtatacttttatttttattccattattttctgtgtttttctccGATGTGTGAATAAACCTGGCAATAAAGCTATGATTCAGTTTCGAGTCTTTGGTTGTATTTGTAATGGCACACTGGCTTGCTGCCCTATATACAGTACACGACTACAGTGCTGGCTACTAGATTTTAAAGAAAAGTGTGTAAGGCAGTGTGGACtatgtcagtgtttctcaaccacgttcattTGGTGAAGGATCACCAAATCTGCATGTTTTGGATATCTCCTTGGTCTGTCAGGTATTTCAGTCTCTGCTTATAAGCTGATAAACTgagtcaggtgtgtttggttaggaaGACATGgagaatgtgcagagctggtggtcctccaggaacgtggttgagaaacactgcacaatgcaaacattttcaacattggctcattctggaaatgtactgcaatatacatttctggagagcgacaaatacgtcccaggagctactttttttagcagtttttgttatcatgaatccacaagaggccgctgtgtacactttgatacctcaaatttctcttgcaagtgctgtttgcgcctgctgttcttgcgtaaatctacCATaggttgctgtcgactgactgacttactgaccaatcgactgacccaccctttcCCTTCCTTAATCCAACTGATGTTTTAAAATGCACAGATTAaccagcacccacccacttccctaaacccaaccgacagtgttttcaaaagcaatccagaaaaagaaaagccctcgcgtcTGCCTGACTTTCACCATGTTTTCAGACttttccacattctcaccctgttatttacttgtttattttacttttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000109210

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039830 False 686 processed_transcript 0.42 3 1725568 1727490
TCONS_00041848 True 3899 lncRNA 0.43 2 1727050 1732110

Neighbor

gene id symbol gene type direction distance location
XLOC_019976 si:dkey-1b17.9 coding upstream 12259 1708760 ~ 1713309 (+)
XLOC_019975 znf1154 coding upstream 20902 1700552 ~ 1704666 (+)
XLOC_019974 znf1160 coding upstream 27390 1691293 ~ 1698178 (+)
XLOC_019973 si:dkey-1b17.6 coding upstream 38398 1680628 ~ 1687170 (+)
XLOC_019972 si:dkey-1b17.5 coding upstream 50058 1668471 ~ 1675510 (+)
XLOC_019978 znf1159 coding downstream 2871 1734981 ~ 1738040 (+)
XLOC_019979 znf1169 coding downstream 19530 1751640 ~ 1757459 (+)
XLOC_019980 znf1178 coding downstream 35849 1767959 ~ 1773733 (+)
XLOC_019981 znf1154 coding downstream 47291 1779401 ~ 1783013 (+)
XLOC_019982 znf1154 coding downstream 54120 1786230 ~ 1794873 (+)
XLOC_019971 NA non-coding upstream 60097 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 71630 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 147822 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 341499 1377331 ~ 1384069 (+)
XLOC_019944 NA non-coding upstream 360707 1316752 ~ 1364861 (+)
XLOC_019991 BX640576.1 non-coding downstream 146037 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 275131 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 427929 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 443747 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 505042 2237152 ~ 2239093 (+)

Expression


Co-expression Network