XLOC_019983 (znf1179)


Basic Information

Item Value
gene id XLOC_019983
gene name znf1179
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1796057 ~ 1800444 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039837
GTGATGACGTCAGCGCTGACGCGTTCattcagcgtcgagtcttcagagctgagctctgccgtcatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGAAggtgaaggaggagagtgaagaactgagtaaagatgaggagaaacatcatgtcaaaagtGAAACTGAAAGTGACTCAAAGATTGAACATAGTGTTTCAGTTAAAACGACAGCTGTAAAACGTTTCaactgcactcagtgtggaaagagtttcgtaCAACCCTCACACCttcatcaacacatgaggatccacactggagagaagcctcacaagtgttcacactgcgacaaatCATTCAGCCATTCAGGACATCTGACAGTacatgagaggactcacactggagagaaaccgtacacatgtactcactgtgggaagagtttcaaatgctcatcacaccttaatgagcacatgataatccacactggagagaaaacacacagatGTGGTCACTGcggcaaaacatttttgaggcCTGCAGTGCTGAAGAAACATCTCAGAGTtcatacaaaggagaagccttatTCCTGTTCTGAGTGTGGGAGCAGCTTTACACAGCAGTCAAGTTTGAGAAGACATCAGCAGATCCACACTGCCGTGAGAGGGTttgtgtgctttgagtgtgagaagacttttattacagctgcagaATTGAGTCGACACCAGAGAatccacactggggagaaaccgTACACTTGTactcagtgcgggaagagtttcacgCAGTCAACACACCTCAACAAACACATAAtggtccacactggagagaaaccattcacatgtactcagtgtgggaagagcttcacACAATCATCACACCTTACCAGCCACATGAAGACACATGGTGCAAACCATGTTTGAGGCTTTCAGAGTTGTAGAAACATCTTAGGGCCTTGATATATGTTGAACTAAGTTCTGTCGTTCTCTGTTTGAGGGCAGGGAGAAGtttgtagggatggctgacgtgaaactgacgtttcgacacagtgttgTGATCCTGAAGCCTGAGTGTTTCAGATCACTGCACCAAAGCATGATGTGAAATgccctggtcacgtgactaaagtgtttcaaaacaccaggctgcgtccgaaaccgcctactacttagtaggtactgcatttgaatttaatagTACTActaacagaattattacttattgggcctaaatcttgcacacagcagatctcgcaactcaatttacaattagagggatacaaagttagctttagctctactataaaagatctgggtgtcatattagacagcaatctaacttttaaaaaccatatatcccatgtcacaaaaactgccttctttca

Function

symbol description
znf1179 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-622 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000104613

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039837 True 1427 mRNA 0.44 3 1796057 1800444

Neighbor

gene id symbol gene type direction distance location
XLOC_019982 znf1154 coding upstream 1184 1786230 ~ 1794873 (+)
XLOC_019981 znf1154 coding upstream 13044 1779401 ~ 1783013 (+)
XLOC_019980 znf1178 coding upstream 22324 1767959 ~ 1773733 (+)
XLOC_019979 znf1169 coding upstream 38598 1751640 ~ 1757459 (+)
XLOC_019978 znf1159 coding upstream 58017 1734981 ~ 1738040 (+)
XLOC_019984 znf1168 coding downstream 5791 1806235 ~ 1809533 (+)
XLOC_019985 znf1184 coding downstream 14964 1815408 ~ 1818563 (+)
XLOC_019986 znf1002 coding downstream 21274 1821718 ~ 1825814 (+)
XLOC_019987 znf1183 coding downstream 36338 1836782 ~ 1838576 (+)
XLOC_019988 znf1182 coding downstream 45703 1846147 ~ 1849410 (+)
XLOC_019977 BX649416.3 non-coding upstream 63947 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 130586 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 142119 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 218311 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 411988 1377331 ~ 1384069 (+)
XLOC_019991 BX640576.1 non-coding downstream 77703 1878147 ~ 1880670 (+)
XLOC_020000 NA non-coding downstream 206797 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 359595 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 375413 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 436708 2237152 ~ 2239093 (+)

Expression


Co-expression Network