G17773 (LOC106573861)


Basic Information

Item Value
gene id G17773
gene name LOC106573861
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 18384311 ~ 18387905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU20799
GGACCTCCTCCGCCTTGACCGAGAGCTGGAGCGGGAATGCTTGCGCTTGTCGTCTTTCTTATTTCCAGGCTCAATAGCTGCAGAGATGAGAGACTGTGCCTCTCTGACCCTCTTCATGGCAGCCTCAATCTCCTTGTTGGAGTCATTCTTCATACCATGATTAACCATCATACCAGCAGCCATTGGATTCATCTTAGTAGGATCCATGGATTGCATAAGCTTCAGAAAGTCAGCAGAGAGGGCCTAAAATAGAGAACACAAATGCATAGCTATATAAATGTGATAATTCCACCAATAGGTTATCAGAAAAGGTGTTATGCTGTTGTTATAACCTAGATCTGTTTTAAAAGTACAAAGAGTAGTGTAGAAAGTAGCCATGTCCAACCTGAGGGTTCATGTTGCCAGACATGCCCATGGCAACCATGGGATCCATGTTTGGATTTCCAAGAGCTGAAAGGGGCACACCTCCCATAGACGCCAAATGATTTGGAGTGGGGAGAAGGCCCCCTCCAGGCATGCATCCCGCCACAGCATTCGCTGGTGCCAGCAGTGACAGAGCTTTAGACTCATCAGGAATCACCCTGTACTTGTTTTTTAAGTCATGAACCAAACGTAAGCAAGCACAGCCGGTTGTCCAGTGGGATGTGCTCTCAAGTTTCATTAGATGTTTTATGAACAAGCGATACGCGTCGGCTGCTTCGCTACAAAGCACACAAAAACATCAAGATACACAAAACAAAGTTCATGATTTTGGCGTCAACAGCAGGGAACAGTTCATTACTTTTGCCTCAAACACTTACCATtacattaaataaaataaatgctcAACCAAATTCTGTTTTCTGGGCTTTTGCTGATGGCTTCTTTCTTCCAAAGAGCCTACAACACTTGACTGGCTACTGTATTCACCAGGTACAGTGTTGTAAAGTTTAACTTAACTTGCAACTTACAGAAATGCTGACAAGGAAAAAAAAACAAGTACAGAGTAGGCTCTTATAAGTAACGGAAAATTCCAGCAAAAGGCCGAATACAATGCTGCCCAATGCTGAAGGAAAATATTATAcaatagttaaataaaaaggaaaatcTTATGAGATGATCCATGGGTGTGCAATCTGAAATTAAGCTAATTTCAAATCAAACAACTGTTCATATTTACAGAGAAATGACAGAAAGGACACTTGAGAAACAGGATAAGCTGCAGAAGACAAAACTGTTGGGTGGCATTTTCAGCAGGGCCTGGTATATAGGGCTGGCTGAACCAGGAAAAAGAActgtaaaacacaacaacaaaaagaaaaaCCACCGTTAAACGTTTGTCTTACTGAACCCTTTCAGAGTCAAGTGGAGAGGATCATTataaagcatttcactgcaacAACAACCAGAGTTATTTTACCTGCAGTATATGTGGGAATGGAGATACACATATATAAAAGGACTGAAACACAGCtattcaagttggatgggttaaggtaaaaaaaaacaaaaaaaaacataagcATGTGAATCTTCATAATCAGGACCAAAATGGTGTTCAGAATCTTCCAGGACTATAGCTAGAATTAACTAAAATGATGTAGACCTAGTACTATACAAATCTACTCTGGCATGCATAGCTGCAATTAGTTAATTTACCTTTGCATGCTTCCTTTAGCTGATTAGATGCACACCCACTACTGATTGTGACCTTCATCAAACTTTAAATCTCTTAAGTGTCCAGATTTGAGATTGTTGATATGCGGGGACAGGGCGAGCCCTCGGGCCCTGCTATTGCTATGGTTCATTGAGTGGTTACCCTTATAATGAAAAAGAATGCCTTGGACATAGAGAAAGAGTTAATCTTTACAGCAGAACAGTGGGAAGGGACTCGTGAGCCGAGTGGCCATTTATTTGTCTAATATCCTGATGGTTGTAGAGGACCCTTTTCAGTCAGCATGGAAGGGGTTCTGCAAATGCCTTGTCCACTATGAAAACCACAACacaaatgacagagagagaagtttaaaaaaataaaaatatgctaGTACAGCAAGATTACACATATTCCCCTTTTACCCCTAGTATATTTCCAAATTTTTGCAACAATCCAAATAGTGTATGGTTTTGGATGTAGCGTTGGGTTTGGTTAAGCTTTGTTAGTTCATATAGTATGTTGGAAAACATTAGAAATAGGACAAAGATCACCAACCTTCTGCAAATGGGACAACAATCAGAGCTCTGTCCACGAAGACGGTGTTGGTCAGATGCTGGGACACTCCAACAGACTCCGTCTCAAGGAACTTTACAAAACAGACACGTGAAGTCACAGGCAAGGGAGATTCACTGGAAGAAAATACACATTTGTTGTGCAAGAAATAAAGATTCTCGACATAAGGTAACAGAAACAAGGTTCTAACAATGGTTAGTACGGCGTATTCGTGAAAACAAATGCTCACTAATCATTTTTCTAACGAAGCATCTTGTATGCTATAATTGGGAAGAGTTGAAAGAACATATCTCTTGCAGTCTTTTCTTTGCCACGAGAGCTTCAGAGGGATGATCAAGAAGTCTCCTAACTCCTACCTTAACTGCAGTGCAGCCAGGTGTAATTCGACAGGTGAAAAACAGCAAAGCACAGAACACATCAATTAGGCTAGCTCCTACTACCCTGCCCGGTTATTTCATAGCATGGCGAGGGTAATTCAAAGATTCAAAACAGCTTCTGCTTCCAGTTTGTTTGGTCAACTCGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20799 True 2733 lncRNA 0.45 5 18384311 18387905

Neighbor

gene id symbol gene type direction distance location
xxylt1 LOC106573863 coding downstream 1234 18310688 ~ 18383077 (-)
LOC118944537 NA coding downstream 166601 18215104 ~ 18217710 (-)
LOC110497564 LOC106573866 coding downstream 285633 18089520 ~ 18098678 (-)
LOC110497425 LOC106573868 coding downstream 325709 18008683 ~ 18058602 (-)
jak3 jak3 coding downstream 472784 17872596 ~ 17911527 (-)
LOC110497762 LOC106573859 coding upstream 3216 18390123 ~ 18450517 (-)
LOC110498635 LOC100380752 coding upstream 124631 18512536 ~ 18516021 (-)
LOC110498717 LOC100380752 coding upstream 174534 18562439 ~ 18678439 (-)
LOC118943879 NA coding upstream 302356 18690261 ~ 18692032 (-)
LOC110499356 LOC106573829 coding upstream 380379 18768284 ~ 18825716 (-)
G17068 NA non-coding downstream 203123 18180971 ~ 18181188 (-)
G17067 NA non-coding downstream 204061 18180042 ~ 18180250 (-)
G17063 NA non-coding downstream 206484 18177611 ~ 18177827 (-)
G17056 NA non-coding downstream 209533 18173667 ~ 18174778 (-)
G17865 LOC100136725 non-coding upstream 80877 18468782 ~ 18469768 (-)
G17837 NA non-coding upstream 100310 18488215 ~ 18488559 (-)
G17890 NA non-coding upstream 140405 18528310 ~ 18534746 (-)
G17906 NA non-coding upstream 168142 18556047 ~ 18557096 (-)
G16161 LOC106573901 other downstream 1127070 17255236 ~ 17257241 (-)
G16100 LOC106573897 other downstream 1247954 17131420 ~ 17136357 (-)
LOC110492105 homer3 other downstream 1512383 16838135 ~ 16871992 (-)
G15470 NA other downstream 1852835 16531047 ~ 16531476 (-)
mydgf LOC106573827 other upstream 488972 18876547 ~ 18888907 (-)
LOC110502937 ccl25 other upstream 1242588 19630376 ~ 19633058 (-)
G20266 NA other upstream 2411215 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 2697393 21085298 ~ 21089250 (-)

Expression


Co-expression Network