G18904


Basic Information

Item Value
gene id G18904
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19661353 ~ 19663906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU22018
tttttctccccaatttcctaCTCTATGAACACACCTGCGTTGTATTGGATCAATCACCACTACTGTAAACTATCACCTAATATATTGAAATTAATGGCATGTTAAGAGGCCAATGCAGATGACATGTACCTATGAAAACATATTCCAGTCACAGATACAGTATGAGACAGATGCTCTTGTACAATAGCAGCAAGGGCGCATCCATGTCAACTAGGTATCATAACATCCTCTTCACTCAACTTCCATTCAAAGATGGACTGTTTTGATCTCGATCTAACAGAATATCAACATTGACTTGTATAGTGATAGGAAATGCAACAAAATAGCACCAGGTTATGGAACAACAACAGCTAGGcataacaaaaaaacaacaaaaaaacaggtaGATGTTTTAAGGGAACTATAGCAGACATGACAGAAATTTCAGCAACAAAAATATAACATGAACAAAAGTGTATATCGGTCTTACAGTCACTCCCCAACAAATAACCATCAACGACCCCAATGTAAACAACATTCAAAACTTCATTATCAACCACCTTTGCCAATTATTCAATGGACAGCCCCAGTTCATGTGCATTTACGAACATTAAAACAATTCATATTGATGGGAGAAATATCACAGAGAAGGAAAAGTGCTGAAGAACGTCGGCCCCTGGCCCTTTATATAGAGACAAGTTGCCATACATTCATGTCCAGGGCCCAGTTTCTTTTTAAGTTATCTAGATTTTACCTATCGGATAGtattaaatgcatagaaatagaatgaatagaatggacaaaacattgacttgaatggggacttccgttctattcattctattcttaTCTGataggcgaaacccagataactTTTTAAAAACTGGGCCATTAGGAATAGTCCTGTTTGTAGCTACACAAGCAGAATGTGAAAAATGGAGAGAACACCATTTTACAGAGCACATTACATGGTGAGGTTTCTATAGACTGCAGTGAAGAAGAGTACTAAATAAGAAGTTGTCCTTTTTTTTTACACTTAAAAGGAGTAATCTactcaaaaactatattttggaaTTTGTTTCATTATCAACAGTGAAATGACAATTACCTAAATAAAGTTTGAGTGGATTATTCCTTTAAAGGCTGCTTATTCAATAATATACATTACAGGATATATACATTTTAACCAATAATATGTCTACttgcctgtttttttttgtttcaaaCTTTTCTTAGTATACTTTTTGTtagttaaaatacatttttttcacatCAAAGGCTTGTAGTAAATGAAAAAGTAGAACGCTATAATACAACTTAGAAATATTACTCATTCCAACGATGAGGAAGAAAAAGGCTTAAAACAAGAGGAACTACACTTCACTGAAGAAAATATGACATTATTCATCTACGTCTCTTTAAGGGCTGTTTGTTTTAAATACACCAGACCAGAGCCATCCATTTAACAAAGGAATAAATAGAGGGCTCAGCACCAGACTATTGGTGAAAAATACTGTACCCTGTGTGCGTAGTACCACCTGTTCCAATGTCTATAGCTCTTTGAATAAAATGGCAGCATTCGCTGTTCTGAGAGTATATGTGCATTTTGTAGGGTTTTGATGTCAAACAAGTTTAGGACAGATGCAAATAATGACATGCTAGATACACCAAATGCCAACACCCTAACCTAAAAGTGATTATATGGGCCTTTCTGATCGCATGAAAAAAATagggattttgttgttgttgcaatggTCTTATATGATTCTGAGATCGTGGATGTTATACACAAAGCCTTGTGATTGGAACTTATTTAAAACTAATTACATAATTGTAAACCACTCAAACATAGAAAGGGTTtcttccatatatatatatatatatatatatttgagaacATATATATTTATCTGACCTATCTaaaaaatgtttatatatttgAAACAAACAAATCTAACGGCTATATTCAGGGTAAACTTTGGGGTCATGGTGCAAACCTGTTGTAAAATGATCAAATCCAACAAGCTTTCTTATTTACAGAATTAGTTCATTTTCGCATGAATTTCAAAAGCAAAGTCGATAATATTAACTATCAATAAAAACGTAATGtaccagtaataataataatcatgaaCACAGGTAAATcccactatttaattaaatattttaTGGCTACGAACATCAAAGCAGGTGTTTGCACAAGGGATTTTAAATTCAACCAATTtgtggtaaaaaaataaatgacaatGTGGACGACAGACTAAAAACTAACAGTGGCCAGAGGTGGTATTGACGGACTAATCCTAGCTAGAGTGTGTGCAAGCATTTTGCCTTAGAAAAATACAACTTGAAGTAAGAGTTCAGACACTCTTCAATGACAAAACTCcgtgaaataaaaaaaagactTTATAAACAAATATTTGCTAGGCAACTCAATCTTTACCTCGCTGAACAAAATACAAGCCCCACTGAAGTGCCTGAGGTCTGTTCTTTTGCAAGGTGGCTAAAGTCCCACTTTTAACAGCAAACTATTTAGAATGTACTTATATCAGCTAGAGAAGAAAACTGCTTTCTC
>TU22022
aatgtttatatatttgAAACAAACAAATCTAACGGCTATATTCAGGGTAAACTTTGGGGTCATGGTGCAAACCTGTTGTAAAATGATCAAATCCAACAAGCTTTCTTATTTACAGAATTAGTTCATTTTCGCATGAATTTCAAAAGCAAAGTCGATAATATTAACTATCAATAAAAACGTAATGtaccagtaataataataatcatgaaCACAGGTAAATcccactatttaattaaatattttaTGGCTACGAACATCAAAGCAGGTGTTTGCACAAGGGATTTTAAATTCAACCAATTtgtggtaaaaaaataaatgacaatGTGGACGACAGACTAAAAACTAACAGTGGCCAGAGGTGGTATTGACGGACTAATCCTAGCTAGAGTGTGTGCAAGCATTTTGCCTTAGAAAAATACAACTTGAAGTAAGAGTTCAGACACTCTTCAATGACAAAACTCcgtgaaataaaaaaaagactTTATAAACAAATATTTGCTAGGCAACTCAATCTTTACCTCGCTGAACAAAATACAAGCCCCACTGAAGTGCCTGAGGTCTGTTCTTTTGCAAGGTGGCTAAAGTCCCACTTTTAACAGCAAACTATTTAGAATGTACTTATATCAGCTAGAGAAGAAAACTGCTTTCTC
>TU22019
tttttctccccaatttcctaCTCTATGAACACACCTGCGTTGTATTGGATCAATCACCACTACTGTAAACTATCACCTAATATATTGAAATTAATGGCATGTTAAGAGGCCAATGCAGATGACATGTACCTATGAAAACATATTCCAGTCACAGATACAGTATGAGACAGATGCTCTTGTACAATAGCAGCAAGGGCGCATCCATGTCAACTAGGTATCATAACATCCTCTTCACTCAACTTCCATTCAAAGATGGACTGTTTTGATCTCGATCTAACAGAATATCAACATTGACTTGTATAGTGATAGGAAATGCAACAAAATAGCACCAGGTTATGGAACAACAACAGCTAGGcataacaaaaaaacaacaaaaaaacaggtaGATGTTTTAAGGGAACTATAGCAGACATGACAGAAATTTCAGCAACAAAAATATAACATGAACAAAAGTGTATATCGGTCTTACAGTCACTCCCCAACAAATAACCATCAACGACCCCAATGTAAACAACATTCAAAACTTCATTATCAACCACCTTTGCCAATTATTCAATGGACAGCCCCAGTTCATGTGCATTTACGAACATTAAAACAATTCATATTGATGGGAGAAATATCACAGAGAAGGAAAAGTGCTGAAGAACGTCGGCCCCTGGCCCTTTATATAGAGACAAGTTGCCATACATTCATGTCCAGGGCCCAGTTTCTTTTTAAGTTATCTAGATTTTACCTATCGGATAGtattaaatgcatagaaatagaatgaatagaatggacaaaacattgacttgaatggggacttccgttctattcattctattcttaTCTGataggcgaaacccagataactTTTTAAAAACTGGGCCATTAGGAATAGTCCTGTTTGTAGCTACACAAGCAGAATGTGAAAAATGGAGAGAACACCATTTTACAGAGCACATTACATGGTGAGGTTTCTATAGACTGCAGTGAAGAAGAGTACTAAATAAGAAGTTGTCCTTTTTTTTTACACTTAAAAGGAGTAATCTactcaaaaactatattttggaaTTTGTTTCATTATCAACAGTGAAATGACAATTACCTAAATAAAGTTTGAGTGGATTATTCCTTTAAAGGCTGCTTATTCAATAATATACATTACAGGATATATACATTTTAACCAATAATATGTCTACttgcctgtttttttttgtttcaaaCTTTTCTTAGTATACTTTTTGTtagttaaaatacatttttttcacatCAAAGGCTTGTAGTAAATGAAAAAGTAGAACGCTATAATACAACTTAGAAATATTACTCATTCCAACGATGAGGAAGAAAAAGGCTTAAAACAAGAGGAACTACACTTCACTGAAGAAAATATGACATTATTCATCTACGTCTCTTTAAGGGCTGTTTGTTTTAAATACACCAGACCAGAGCCATCCATTTAACAAAGGAATAAATAGAGGGCTCAGCACCAGACTATTGGTGAAAAATACTGTACCCTGTGTGCGTAGTACCACCTGTTCCAATGTCTATAGCTCTTTGAATAAAATGGCAGCATTCGCTGTTCTGAGAGTATATGTGCATTTTGTAGGGTTTTGATGTCAAACAAGTTTAGGACAGATGCAAATAATGACATGCTAGATACACCAAATGCCAACACCCTAACCTAAAAGTGATTATATGGGCCTTTCTGATCGCATGAAAAAAATagggattttgttgttgttgcaatggTCTTATATGATTCTGAGATCGTGGATGTTATACACAAAGCCTTGTGATTGGAACTTATTTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22018 False 2554 lncRNA 0.45 1 19661353 19663906
TU22022 False 650 lncRNA 0.38 1 19661353 19662002
TU22019 True 1799 lncRNA 0.48 1 19662108 19663906

Neighbor

gene id symbol gene type direction distance location
LOC110502937 ccl25 coding downstream 28295 19630376 ~ 19633058 (-)
LOC110502819 dpoe4 coding downstream 41159 19605164 ~ 19620194 (-)
LOC110502382 LOC106573549 coding downstream 122571 19536427 ~ 19538782 (-)
LOC110501969 LOC106573546 coding downstream 178030 19474588 ~ 19483323 (-)
LOC110501773 LOC106573544 coding downstream 197115 19452917 ~ 19464238 (-)
LOC110503352 LOC106573557 coding upstream 68963 19732869 ~ 19743641 (-)
LOC110503449 LOC106611608 coding upstream 165419 19829325 ~ 19832397 (-)
LOC110503510 nduab coding upstream 172367 19836273 ~ 19838863 (-)
larp6b LOC106573560 coding upstream 177615 19841521 ~ 19844225 (-)
tmprss9 tmprss9 coding upstream 201976 19865882 ~ 19890280 (-)
G18895 LOC106573555 non-coding downstream 4938 19651159 ~ 19656415 (-)
G18865 NA non-coding downstream 77684 19583252 ~ 19583669 (-)
G18853 NA non-coding downstream 96948 19563382 ~ 19564405 (-)
G18852 NA non-coding downstream 99618 19561526 ~ 19561735 (-)
G18903 NA non-coding upstream 406 19664312 ~ 19665665 (-)
G18905 NA non-coding upstream 3339 19667245 ~ 19667444 (-)
G18906 NA non-coding upstream 5392 19669298 ~ 19669522 (-)
G18917 NA non-coding upstream 20989 19684895 ~ 19685153 (-)
G18918 NA non-coding upstream 21618 19685524 ~ 19686405 (-)
mydgf LOC106573827 other downstream 775701 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 1266493 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 1566415 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 2404112 17255236 ~ 17257241 (-)
G20266 NA other upstream 1135214 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 1421392 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 1872027 21535882 ~ 21565723 (-)
G21993 NA other upstream 2717964 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 3175939 22839845 ~ 22843305 (-)

Expression


Co-expression Network