XLOC_019991 (BX640576.1)


Basic Information

Item Value
gene id XLOC_019991
gene name BX640576.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1878147 ~ 1880670 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039846
AAACGAGGAAGTGAAGTCAAGTCCGCCATTTCATCTTCTTCTTTATATCgggtaaAAAAGAAAGGAATCATGCAAGCTGAAGGAAATTACAACTCTCACATCAGTGCATTACTAATTGTTTGACTTCATCATCAAGCACACCagctcagattgtgatggaccgggaatgcgacaccagttactcttaa
>TCONS_00039847
ACGAGGAAGTGAAGTCAAGTCCGCCATTTCATCTTCTTCTTTATATCgggtaaAAAAGAAAGGAATCATGCAAGCTGAAGGAAATTACAACTCTCACATCAGTGCATTACTAATTGTTTGACTTCATCATCAAGCACACCagACGGTGCGGTGGTACAGTGGATAGCTCTGTTGCCTCCCAGCAAAAAtgtttctggttcgagcctcggctgggtcagttggcatttctgtgtgaagtttgtatgttctccccgtgttggcgtgggtttcctccgggtgctccagtttcccccacaagacatgcggtacaggtgaattggctcagattgtgatggaccgggaatgcgacaccagttactcttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATTAACCCAGGGAAGGATCGAAAATGGAGAAGACCAGATCAAGAAAGACTACATCAAGATCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101600

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039846 False 188 processed_transcript 0.40 3 1878147 1879980
TCONS_00039847 True 480 processed_transcript 0.46 5 1878149 1880670

Neighbor

gene id symbol gene type direction distance location
XLOC_019989 znf1174 coding upstream 16248 1853999 ~ 1861899 (+)
XLOC_019988 znf1182 coding upstream 28737 1846147 ~ 1849410 (+)
XLOC_019987 znf1183 coding upstream 39571 1836782 ~ 1838576 (+)
XLOC_019986 znf1002 coding upstream 52333 1821718 ~ 1825814 (+)
XLOC_019985 znf1184 coding upstream 59584 1815408 ~ 1818563 (+)
XLOC_019992 znf1158 coding downstream 18472 1899142 ~ 1901705 (+)
XLOC_019993 si:dkey-15h8.10 coding downstream 23876 1904546 ~ 1909424 (+)
XLOC_019994 znf1156 coding downstream 30599 1911269 ~ 1919599 (+)
XLOC_019995 znf1181 coding downstream 41623 1922293 ~ 1925346 (+)
XLOC_019996 znf1153 coding downstream 49919 1930589 ~ 1935844 (+)
XLOC_019977 BX649416.3 non-coding upstream 146037 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 212676 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 224209 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 300401 1576863 ~ 1577746 (+)
XLOC_019947 BX322657.1 non-coding upstream 494078 1377331 ~ 1384069 (+)
XLOC_020000 NA non-coding downstream 126571 2007241 ~ 2290657 (+)
XLOC_020006 BX640537.2 non-coding downstream 279369 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 295187 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 356482 2237152 ~ 2239093 (+)
XLOC_020033 NA non-coding downstream 665416 2546086 ~ 2546878 (+)

Expression


Co-expression Network