G19030 (LOC106573562)


Basic Information

Item Value
gene id G19030
gene name LOC106573562
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19839837 ~ 19841484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU22159
CATGAACAGAGTGAGCAACACACATTTTACAGTTCAGAGGCAATATGCAACTGTCCCCATGCTAAAGGTACAGTGATCACAAACGGAACAATTTAAGCAGCCCAATCATGCAGTTGTACTGAAAGAAAAAGCAGACAAACTTTTAGCCACCTGATTTAAGCCAACACTATATTGCTTCTATAATGATTAAGCAAAACCATACAATATAAAGAGTACAAGGCATGGCTGTGACGTCAAACTACATTTGTAGATTTAATACAAGGTTCAATCAGGAAGGCTGATCTGAATGCTTGTTTAAACAACTCACTTTGTATTCTATGCCCGTAGAATACAAAAACAGCATAGCATCTTGTTTCATCTCTTCCCATTAGCCAAGTGTGGAATGCCATTCACCTATTTACCTTAGCCTATAAGCGTGGCACAATAATGCACATTCCTCACGCTTGCCATTTAACCTATGGGCTCACGCTTACCACCTTTCTCTCAACCAATGGGTCTAAATCTTGGGATGTATTTGTCAATTTACCCTTGCTCTCATACttgctgtttttcagcaacagTTTGACAACCATCCACCTTCCTACCACCACCTATAATAACCTTGAAGGACATCATAGGAACTTTCCTTCCATTATGAAAAAAATAACCACTTTGATTCTGACCCTACTGGAATGTGACATCTATGTAGCAGCTAATGTTGCATAGACTTGCTTCACTGAAGCAAATATTGATGCCAGTAAGAGGCATGTCTTATATTCACCATTAAATGTGTCATGTTTACAAGGGAGTAACTACAATCCCTGAAAAAACTGAATTGTCACGAAAAAAAAGATTAAAagtatacactacatatacaaagcATGGGATGGATTGGAACCTAGCCTTGCAGGTGCTGCAGATGTACTTTCTGAACTTTGACCAGGTGAACACTGACCATAGAGGTCCTGTTTACACTATTTCCAAATATTTGATATTACAGTATAAAAATATAGCAGTTCAAACAGTAACAGACGATAACCAGATGTCTATACATTTCACATCTGGTTAAGACATGGAATCAAGGCAGATTAGTTTCTCTCCATTTGGTTACATCAAAGGCTTCATAACGTGTCAAGCAGTTCCCCCACATTCATGTAAGATGTTAAGTTGAACATTAAAAAAATAACGACATGCATGATGTTTTGAAATTACTCATGCCTCTACTTCAAGTACTATCCTCTTCTAGAACCTTTTCACCTCTAACCTATGTAACTCTTCTCAGGGGCCTTTTACTATACCGTTGTTCCAAACACTATCTCATCCAGCTCCTGGTCATCCATGTCATCCTCACTGAGGGAGAAGTCTTTGTGGTTAGAGATGCGGTTGGGACTGCAGTTTGACTCCCCGTCTGTGAGGGACGTATTGGCAGTGGGTTCACCCATCCCCACAACTGGCCCAAGTCTTTCTGCCTCAGCCATATGGGACAGCATACTGTCTAGTAAAGGCCTGCTCTTGCAGATGTTGTCCAGGAGCTGGCAGCGATGTTGCAACTGTCCTATCATAGCATCCTTCTCCTTGACCATGTTCTGAAACCTCTGGATGGTCTCTTCTGACTTGCACAGCTTCTCGTGGAGGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22159 True 1616 lncRNA 0.38 2 19839837 19841484

Neighbor

gene id symbol gene type direction distance location
LOC110503510 nduab coding downstream 974 19836273 ~ 19838863 (-)
LOC110503449 LOC106611608 coding downstream 7440 19829325 ~ 19832397 (-)
LOC110503352 LOC106573557 coding downstream 96196 19732869 ~ 19743641 (-)
LOC110502937 ccl25 coding downstream 206779 19630376 ~ 19633058 (-)
LOC110502819 dpoe4 coding downstream 219643 19605164 ~ 19620194 (-)
larp6b LOC106573560 coding upstream 37 19841521 ~ 19844225 (-)
tmprss9 tmprss9 coding upstream 24398 19865882 ~ 19890280 (-)
LOC110504151 NA coding upstream 78081 19919565 ~ 19934801 (-)
LOC110504304 LOC106573568 coding upstream 254914 20096398 ~ 20117301 (-)
LOC110505227 LOC106573572 coding upstream 338632 20180116 ~ 20187417 (-)
G19015 NA non-coding downstream 10788 19828826 ~ 19829049 (-)
G19006 NA non-coding downstream 24701 19814783 ~ 19815136 (-)
G19004 NA non-coding downstream 27588 19811972 ~ 19812249 (-)
G18981 NA non-coding downstream 30537 19776997 ~ 19809300 (-)
G18966 NA non-coding downstream 88027 19751457 ~ 19751810 (-)
G19032 NA non-coding upstream 4148 19845632 ~ 19845952 (-)
G19034 NA non-coding upstream 12641 19854125 ~ 19854347 (-)
G19038 NA non-coding upstream 15485 19856969 ~ 19857241 (-)
G19089 NA non-coding upstream 23194 19864678 ~ 19865605 (-)
mydgf LOC106573827 other downstream 954185 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 1444977 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 1744899 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 2582596 17255236 ~ 17257241 (-)
G20266 NA other upstream 957636 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 1243814 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 1694449 21535882 ~ 21565723 (-)
G21993 NA other upstream 2540386 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 2998361 22839845 ~ 22843305 (-)

Expression


Co-expression Network