XLOC_019995 (znf1181)


Basic Information

Item Value
gene id XLOC_019995
gene name znf1181
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1922293 ~ 1925346 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039854
gtTGCTCCCGCCTGCCGTGATGACGTCAGCAGCTGCTTGACGCGTTCATccagcgtcgagtcttcagagctgagCTCTGCTGccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagagactgaagaactaatagATGTGATtgtgaaggaggagagtgaagaactgagtgaagacgaggagaaacatcatgtcaagaGTGAAGAAGATACTCACACAAACACTGAAGATAGTTTTTCAGTGGAAAGAGCAGCTGTGAACTGTTTGACCTGCacccagtgtggaaagagtttcagccaccAATGCTATCTCGAGcgtcacatgatgatccacactggagagaaaccttacaagtgttcacaatGCGACATGAGATTTGATTATTTAGTAAAGCTGAAAacacacatgatgatccacactggagaggaACCTCACAGATGTTCACACTGCCACAGGATATTTATTCATCCAGGAAACCTGAAAacacacatgagaatccacactggagagagaccttacaagtgttcacactgcgacatgaGATTCAATAATTTAGGAAACCTGAAAACACACatgctgatccacactggagagaaaacacaccaATGTGAGcagtgcagcaaaacatttttgagggcTTCAGAGCTGAAGAACCATCTTAGAGTTCATACAAGTGAGAGGCCTTATTCCTGCTCTGAGTGCGGAAAGACTGTTATTACAGCTAGAGCCTTGAAAATGCAccagatgattcacactggagaaaaaccattaaCATGTACTCAGTGCGGGAAAGGTTTCACACAAATgtcacaccttaatgaacacatgctGGTTCACACTGGAGTGAAAACTCACAGATGTGATcagtgcagcaaaacatttttgagggcTTCAGAGCTGAAGAGACATCTTAGCGTTCATTCAAACGAGAGGCCGTATTCATGctctgagtgtgggaagagttttagacatccgacacatttaaaataccatcagaagatccacactggtgtgaaagagtttGTGTGctctgagtgtgggaagagtttttttAAAGCTGCGGACTTGAGACGACACCAGAGGAGTCACACTGGAGatttcaagtgttcacactgcgacaaaacATTCAGACGTTCAGGacacctgaaaacacatgagaggactcacactggagaaagAA

Function

symbol description
znf1181 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-386 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000102678

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039854 True 1228 mRNA 0.44 3 1922293 1925346

Neighbor

gene id symbol gene type direction distance location
XLOC_019994 znf1156 coding upstream 2694 1911269 ~ 1919599 (+)
XLOC_019993 si:dkey-15h8.10 coding upstream 12869 1904546 ~ 1909424 (+)
XLOC_019992 znf1158 coding upstream 20588 1899142 ~ 1901705 (+)
XLOC_019990 si:dkey-15h8.17 coding upstream 24541 1868983 ~ 1897752 (+)
XLOC_019991 BX640576.1 coding upstream 41623 1878147 ~ 1880670 (+)
XLOC_019996 znf1153 coding downstream 5243 1930589 ~ 1935844 (+)
XLOC_019997 znf1167 coding downstream 15249 1940595 ~ 1945452 (+)
XLOC_019998 si:dkey-15h8.15 coding downstream 21330 1946676 ~ 1949027 (+)
XLOC_019999 zgc:174222 coding downstream 27750 1953096 ~ 1960772 (+)
XLOC_020000 NA coding downstream 81895 2007241 ~ 2290657 (+)
XLOC_019977 BX649416.3 non-coding upstream 190183 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 256822 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 268355 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 344547 1576863 ~ 1577746 (+)
XLOC_020006 BX640537.2 non-coding downstream 234693 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 250511 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 311806 2237152 ~ 2239093 (+)
XLOC_020033 NA non-coding downstream 620740 2546086 ~ 2546878 (+)

Expression


Co-expression Network