XLOC_019998 (si:dkey-15h8.15)


Basic Information

Item Value
gene id XLOC_019998
gene name si:dkey-15h8.15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1946676 ~ 1949027 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039858
CAAACACCTGTAAGCCGTTAGCATGTTAGCAGTTCTGGTTCCCTCGTCCCAGAGTCAGTGGGTTATTTGAATGTGATTTTGGTTAAATGGCTGAAATAAGCACTGACGCGTTCATccagcgtcgagtcttcagagctgagctctgccgccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagATGTGGTGGTGgaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaagaGTAAGAAAAAAACTCAAGTGAAGGTCAGACGTAGTTCATCAATGAAAAAAACAGCTGTGAAATGTtacacctgcactcagtgtggaaagagctacAACCTCAAAGAGACTCTCAAGCGTCACCTGAttattcacactggagagagaccttacaagtgttcacactgcgacatgCGATTCAATAATAGAGGGAACCTGAAAACACACAagctgatccacactggagagagaacacacaaatgtgatcagtgcggcaaaacattt
>TCONS_00039859
CCGTTGCTCCCGCCTCGCCGTGATGACGTCAGCACTGACGCGTTCATccagcgtcgagtcttcagagctgagctctgccgccatcagtgaaagacaaagacagagtttattgaaggacagtgagaagatgagtgatccagaaccctgcagaattaaacaggaagacactgaagaactaatagATGTGGTGGTGgaggaggagagtgaagaactgagtgaagatgaggagaaacatcatgtcaagaGTAAGAAAAAAACTCAAGTGAAGGTCAGACGTAGTTCATCAATGAAAAAAACAGCTGTGAAATGTtacacctgcactcagtgtggaaagagctacAACCTCAAAGAGACTCTCAAGCGTCACCTGAttattcacactggagagagaccttacaagtgttcacactgcgacatgCGATTCAATAATAGAGGGAACCTGAAAACACACAagctgatccacactggagagagaacacacaaatgtgatcagtgcggcaaaacatttttgagaCCTTACGAGCTGAAGAAACATCTTAGACTTCATATAAATGGGAGGCCGTATTCATGttctgagtgtgggaag

Function

symbol description
si:dkey-15h8.15 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039858 False 576 processed_transcript 0.44 4 1946676 1948949
TCONS_00039859 True 586 mRNA 0.45 3 1947494 1949027

Neighbor

gene id symbol gene type direction distance location
XLOC_019997 znf1167 coding upstream 1224 1940595 ~ 1945452 (+)
XLOC_019996 znf1153 coding upstream 10832 1930589 ~ 1935844 (+)
XLOC_019995 znf1181 coding upstream 21330 1922293 ~ 1925346 (+)
XLOC_019994 znf1156 coding upstream 27077 1911269 ~ 1919599 (+)
XLOC_019993 si:dkey-15h8.10 coding upstream 37252 1904546 ~ 1909424 (+)
XLOC_019999 zgc:174222 coding downstream 4069 1953096 ~ 1960772 (+)
XLOC_020000 NA coding downstream 58214 2007241 ~ 2290657 (+)
XLOC_020001 znf1174 coding downstream 82996 2032023 ~ 2034151 (+)
XLOC_020002 znf1144 coding downstream 162093 2111120 ~ 2118122 (+)
XLOC_020003 znf1155 coding downstream 171788 2120815 ~ 2125835 (+)
XLOC_019991 BX640576.1 non-coding upstream 66006 1878147 ~ 1880670 (+)
XLOC_019977 BX649416.3 non-coding upstream 214566 1725568 ~ 1732110 (+)
XLOC_019971 NA non-coding upstream 281205 1660187 ~ 1665471 (+)
XLOC_019970 BX649416.2 non-coding upstream 292738 1650128 ~ 1653938 (+)
XLOC_019963 AL954741.1 non-coding upstream 368930 1576863 ~ 1577746 (+)
XLOC_020006 BX640537.2 non-coding downstream 211012 2160039 ~ 2163446 (+)
XLOC_020007 BX640537.1 non-coding downstream 226830 2175857 ~ 2178463 (+)
XLOC_020013 NA non-coding downstream 288125 2237152 ~ 2239093 (+)
XLOC_020033 NA non-coding downstream 597059 2546086 ~ 2546878 (+)

Expression


Co-expression Network