G20456 (LOC106573594)


Basic Information

Item Value
gene id G20456
gene name LOC106573594
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21174484 ~ 21175171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU23878
atgtaattcattttagaataaggctataacgtaagaacattttgaaaaagtacaggggtctgaatactttctgaatgcactgtatgtgtgtgtacgtgtgtgtgtttgtttagatACCTTCTGAACAGTGCTCTCCTTCTGGATCTGGCTGTGTCGTAGTTTCTTCAGCAGCACCAGCTTGGCCTCCTGGAGTCTCAGCTCCTCCTTCAACTGTTTGATGATGCGCTCCCTCTCATCTGGGCTGCTCTTcCTGAGCAGGTCagtgtctgtctttctgtagtAGTTCAGGCCGTTCACGACGGGGATGGACAGCTCGTTGTCTGACAGCACTATGACATCATTGTTTGGTGACAGGGGCTGCCTCTCTTTCTTTACGTcactggagagaagagagaaaaacgAAAACGAAATAACTAAACTCGACTTTACTAGTAGGAAAAAATATGACATGGAAAGCAAAGATGATATGGAAAGTCAAACCCCCTTTCCTCACGCAAATTCATTTGTGCGTGATCATACAACACTCATTAATCATATTACAAATGATGGCCACAACGGCC

Function

NR:

description
PREDICTED: transcriptional repressor p66-alpha-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23878 True 560 lncRNA 0.43 2 21174484 21175171

Neighbor

gene id symbol gene type direction distance location
LOC110507379 LOC106573593 coding downstream 40707 21128187 ~ 21133777 (-)
LOC118945319 NA coding downstream 85308 21085298 ~ 21089250 (-)
LOC110532071 LOC106573588 coding downstream 169275 20988056 ~ 21005209 (-)
tmem221 LOC106573585 coding downstream 242032 20927809 ~ 20932452 (-)
rfxank rfxank coding downstream 251551 20919626 ~ 20922933 (-)
LOC110511465 LOC106573796 coding upstream 17173 21192344 ~ 21193157 (-)
LOC118945781 NA coding upstream 57611 21232782 ~ 21242022 (-)
LOC110507674 LOC105011525 coding upstream 182564 21357735 ~ 21362790 (-)
cirbp LOC106573597 coding upstream 187821 21362992 ~ 21368888 (-)
LOC110507736 LOC106573601 coding upstream 360711 21535882 ~ 21565723 (-)
G20425 NA non-coding downstream 53133 21120902 ~ 21121351 (-)
G20423 NA non-coding downstream 79962 21094323 ~ 21094522 (-)
G20419 NA non-coding downstream 94400 21074899 ~ 21080084 (-)
G20307 NA non-coding downstream 311291 20862022 ~ 20863193 (-)
G20557 NA non-coding upstream 135634 21310805 ~ 21312539 (-)
G20666 NA non-coding upstream 182037 21357208 ~ 21357457 (-)
G20668 NA non-coding upstream 195593 21370764 ~ 21371028 (-)
G20669 NA non-coding upstream 195979 21371150 ~ 21371378 (-)
G20678 NA non-coding upstream 207281 21382452 ~ 21382704 (-)
G20266 NA other downstream 374476 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 1541867 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2288832 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 2779624 18390123 ~ 18450517 (-)
G21993 NA other upstream 1206699 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1664674 22839845 ~ 22843305 (-)
G23394 NA other upstream 2448855 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 2647529 23821656 ~ 23861029 (-)

Expression


Co-expression Network