G20980


Basic Information

Item Value
gene id G20980
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21572748 ~ 21575457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU24442
ggtgatgcgttgggcagactgcaccaccctctggagagccctgcggttgtgggcggcgcagttgccgtaccaggcagtgatacagcccgacaggatgctctcaattgagcatctgtaaaagtttgtgagggtcttaggggtcaagccaaatttcttcagcctcctgaggttgaagaggagctgttgcaccttcttcaccacactgtctgtgtgggtggaccatttcagatcgtcagtgatgtgtacgccgaggaacttgaagctttccactgTTTatcagagaagggggagagagaaaggagctggcagagggagagaggaaagtcAGGGAGAAGAGGGGGCGCCCGGGACCGAACCAGAAGGAGACAGGAGTGAATGACGTCTCTCTCCAGTGACGATTGAGTGCTATTTGAAGCGTGTGATAGGGAGAAGGCTGCAGCCAGCGCGCTCTACTCCCCTGACGTCATAGATGAAATCAGGCTGCTCTGCTAGCCTTGACTGGCTGGGCAGGCGGGGGCCCTGTGACTGATAATGACCTTCTGTATCAATGATTAGATTACTGCagccaggagagaggagagaatacagGGGAAATGTCAGTTTGCTGCAGGTCTGCAGCCAGTCACTGCAGAGCTGAGCCCCTGCTCTGAGAGAGAACCATGAGAGTaggagatgcagagaaagagagattgcgAGGAGAAATGTAGTAAATAAAGACTGCAtgaagagagcaagagaaaaaagggggaggaggagtgccCATCCAGTGCTGATTAAATTAGCCTAGCTCGTCCAACGATAAGCCCAGGATAAGCAAGGATTAGTGGCCAGGGGATTCTGCAGAGTCCAGGCATGTAGGTGTGGATGTGTTCATGCATGTGTGTGGGAGGAGGGTGAGTGGGTGGTTTCTCAACTTGTTTGGACCAAGATAGGAAATGGGTGTATCTTGTACTGATCATTGTGTACTGTACACAGTATATCTGTGCACAGTATCTGCATCTGCCTTGATACTGCCTAAttcagccctgaaccttagtcactgttactagccggctaccacccagtactctaccctgcaccttagagactgctgccttttgtacatagtcattgaacactggtcactttaataatgtttacatactgttttacccccTTTACACGTATAtaatgtattctagtcaagggtcatcctgtataactactgctgtacacaccttttctattcatatacctTCCATACTGTCTATATTCAGGAATCTGACATTgctt
>TU24447
gtcagtgatgtgtacgccgaggaacttgaagctttccactgTTTatcagagaagggggagagagaaaggagctggcagagggagagaggaaagtcAGGGAGAAGAGGGGGCGCCCGGGACCGAACCAGAAGGAGACAGGAGTGAATGACGTCTCTCTCCAGTGACGATTGAGTGCTATTTGAAGCGTGTGATAGGGAGAAGGCTGCAGCCAGCGCGCTCTACTCCCCTGACGTCATAGATGAAATCAGGCTGCTCTGCTAGCCTTGACTGGCTGGGCAGGCGGGGGCCCTGTGACTGATAATGACCTTCTGTATCAATGATTAGATTACTGCagccaggagagaggagagaatacagGGGAAATGTCAGTTTGCTGCAGGTCTGCAGCCAGTCACTGCAGAGCTGAGCCCCTGCTCTGAGAGAGAACCATGAGAGTaggagatgcagagaaagagagattgcgAGGAGAAATGTAGTAAATAAAGACTGCAtgaagagagcaagagaaaaaagggggaggaggagtgccCATCCAGTGCTGATTAAATTAGCCTAGCTCGTCCAACGATAAGCCCAGGATAAGCAAGGATTAGTGGCCAGGGGATTCTGCAGAGTCCAGGCATGTAGGTGTGGATGTGTTCATGCATGTGTGTGGGAGGAGGGTGAGTGGGTGGTTTCTCAACTTGTTTGGACCAAGATAGGAAATGGGTGTATCTTGTACTGATCATTGTGTACTGTACACAGTATATCTGTGCACAGTATCTGCATCTGCCTTGATACTGCCTAAttcagccctgaaccttagtcactgttactagccggctaccacccagtactctaccctgcaccttagagactgctgccttttgtacatagtcattgaacactggtcactttaataatgtttacatactgttttacccccTTTACACGTATAtaatgtattctagtcaagggtcatcctgtataactactgctgtacacaccttttctattcatatacctTCCATACTGTCTATATTCAGGAATCTGACATTgctt
>TU24445
atctttatgtttgaagcctgaaatgtggcaaaaggtcgcacagttctagggggccgaatactttcgcaaggcactgtatatgtaactGGGGAAGTTAAGAGTGAGGAAAGATGGCTACATTTGATTTGCATCTATTTGTACAGTAGTACAGTCCCTTTGTGGAAGTTACTGGCATATTCTGCTAATGTTAGACTATTCTCGAAACACCTGACTTCCCAGTCTGCAGTCCAGAGTGCAATGAACCCTCAGCTGTAGATTTACAGCCCACACTAGGCTGttatcaaatcaagtcaaattgtatttgtcacatacacacatttagcagatgttattgcgagtgtagcaaattgcttgtgttcctagctccaacagtgcagtaatatctaacaattcacaagaACAcccacatctaaaagtaaaataatgaaattaagaaatatataaatattaggacgagcaatgtcggaattgtggcattgactaaaatacagtagaataaggtacagtgggtcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgaca
>TU24443
GAAAGATGGCTACATTTGATTTGCATCTATTTGTACAGTAGTACAGTCCCTTTGTGGAAGTTACTGGCATATTCTGCTAATGTTAGACTATTCTCGAAACACCTGACTTCCCAGTCTGCAGTCCAGAGTGCAATGAACCCTCAGCTGTAGATTTACAGCCCACACTAGGCTGttatcaaatcaagtcaaattgtatttgtcacatacacacatttagcagatgttattgcgagtgtagcaaattgcttgtgttcctagctccaacagtgcagtaatatctaacaattcacaagaACAcccacatctaaaagtaaaataatgaaattaagaaatatataaatattaggacgagcaatgtcggaattgtggcattgactaaaatacagtagaataaggtacagtgg
>TU24444
atactttcgcaaggcactgtatatgtaactGGGGAAGTTAAGAGTGAGGAAAGATGGCTACATTTGATTTGCATCTATTTGTACAGTAGTACAGTCCCTTTGTGGAAGTTACTGGCATATTCTGCTAATGTTAGACTATTCTCGAAACACCTGACTTCCCAGTCTGCAGTCCAGAGTGCAATGAACCCTCAGCTGTAGATTTACAGCCCACACTAGGCTGttatcaaatcaagtcaaattgtatttgtcacatacacacatttagcagatgttattgcgagtgtagcaaattgcttgtgttcctagctccaacagtgcagtaatatctaacaattcacaagaACAcccacatctaaaagtaaaataatgaaattaagaaatatataaatattaggacgagcaatgtcggaattgtggcattgactaaaatacagtagaataaggtacagtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24442 False 1272 lncRNA 0.61 1 21572748 21574019
TU24447 False 1041 lncRNA 0.57 1 21572748 21573788
TU24445 False 611 lncRNA 0.46 1 21574847 21575457
TU24443 False 404 lncRNA 0.43 1 21574949 21575352
TU24444 True 452 lncRNA 0.46 1 21574949 21575400

Neighbor

gene id symbol gene type direction distance location
LOC110507736 LOC106573601 coding downstream 7025 21535882 ~ 21565723 (-)
cirbp LOC106573597 coding downstream 203860 21362992 ~ 21368888 (-)
LOC110507674 LOC105011525 coding downstream 209958 21357735 ~ 21362790 (-)
LOC118945781 NA coding downstream 330726 21232782 ~ 21242022 (-)
LOC110511465 LOC106573796 coding downstream 379591 21192344 ~ 21193157 (-)
LOC110508066 LOC106613744 coding upstream 12060 21587517 ~ 21604429 (-)
LOC110532081 LOC106573605 coding upstream 110620 21686077 ~ 21733286 (-)
LOC110508721 LOC106573612 coding upstream 535547 22111004 ~ 22203625 (-)
LOC118966627 NA coding upstream 650748 22226205 ~ 22231598 (-)
LOC110508988 NA coding upstream 817521 22392978 ~ 22400323 (-)
G20971 NA non-coding downstream 39634 21532803 ~ 21533114 (-)
G20960 NA non-coding downstream 54719 21517666 ~ 21518029 (-)
G20956 NA non-coding downstream 96261 21476136 ~ 21476487 (-)
G20727 NA non-coding downstream 122324 21450181 ~ 21450424 (-)
G20725 LOC100380853 non-coding downstream 129692 21442824 ~ 21443056 (-)
G20981 NA non-coding upstream 327 21575784 ~ 21617373 (-)
G21014 NA non-coding upstream 59088 21634545 ~ 21635023 (-)
G21016 NA non-coding upstream 109466 21684923 ~ 21685296 (-)
G21024 NA non-coding upstream 118873 21694330 ~ 21699240 (-)
G21063 bsg non-coding upstream 217949 21793406 ~ 21800722 (-)
LOC118945319 NA other downstream 483498 21085298 ~ 21089250 (-)
G20266 NA other downstream 772740 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 1940131 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 2687096 18876547 ~ 18888907 (-)
G21993 NA other upstream 806413 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 1264388 22839845 ~ 22843305 (-)
G23394 NA other upstream 2048569 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 2247243 23821656 ~ 23861029 (-)
G24542 NA other upstream 2647450 24222907 ~ 24226490 (-)

Expression


Co-expression Network