G20880


Basic Information

Item Value
gene id G20880
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21831910 ~ 21832960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU24326
CCACAACTTTTGTTTAGTCTGGACAATATTGCAAAACATGTTGATGCTTTCAGTAGCACTGAAGGTGTTGACTCATACTGCTTTTTCTATTCTTTGCATGGGCGAACGGGATGGATGCCACACACCAATAACTCAAGCTGAACTGGAAGAGGTGGCTGCAGCTATGGTCCATGTTGTATCTACAATTGTCTCCCTACTGACAGGACAATACATACACTGTTTTGAAGGATCCTGCCCAACCCAAATGCTTCAAGTGGCACAATTACgacaatgacccaacacacctccaggctgtgtaagtgctatttaacgaagaaggagagtgatggagtgctgcatcagacgacctggcctccacaattacccgacATCAACCCAATTTAGAtagtttgggataagttggaccgcagagtgatggaatagcagccaacaagtgctcagctggttgagagaatgctgagtgtgcaaagctgtcatcaaggcaaagcgtggctacaataaagaatgtatatataacattataacatatatttagatttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24326 True 540 lncRNA 0.40 2 21831910 21832960

Neighbor

gene id symbol gene type direction distance location
LOC118946025 LOC106604946 coding upstream 4781 21819189 ~ 21827129 (+)
LOC110508526 bsg coding upstream 29007 21792456 ~ 21802903 (+)
LOC110508358 LOC106573608 coding upstream 46666 21779741 ~ 21785244 (+)
LOC110508215 LOC106573607 coding upstream 84721 21733594 ~ 21747189 (+)
LOC110507802 LOC106573603 coding upstream 200616 21605024 ~ 21631294 (+)
LOC110508655 LOC100380741 coding downstream 191669 22024629 ~ 22107857 (+)
LOC110508905 twf1 coding downstream 379372 22212332 ~ 22226104 (+)
LOC110532091 LOC106573613 coding downstream 448129 22281089 ~ 22422282 (+)
zgc:110339 LOC106573615 coding downstream 599350 22432310 ~ 22435150 (+)
LOC110513869 LOC106560949 coding downstream 787706 22620666 ~ 22623478 (+)
G20848 NA non-coding upstream 66723 21759701 ~ 21765187 (+)
G20810 NA non-coding upstream 132625 21694253 ~ 21699285 (+)
G20800 NA non-coding upstream 147612 21683395 ~ 21684298 (+)
G20799 NA non-coding upstream 194549 21635497 ~ 21637361 (+)
G20783 LOC106613744 non-coding upstream 227510 21587199 ~ 21604400 (+)
G20920 NA non-coding downstream 53669 21886629 ~ 21887084 (+)
G21203 NA non-coding downstream 106163 21939123 ~ 21939329 (+)
G21210 NA non-coding downstream 115228 21948188 ~ 21948544 (+)
G21214 NA non-coding downstream 119571 21952531 ~ 21952872 (+)
G21229 NA non-coding downstream 129979 21962939 ~ 21963157 (+)
G20773 NA other upstream 263722 21567545 ~ 21568188 (+)
G19400 NA other upstream 1522012 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 1555015 20276590 ~ 20276895 (+)
G19359 NA other upstream 1589035 20242645 ~ 20242875 (+)
G19083 NA other upstream 1916078 19915586 ~ 19915832 (+)
G23109 NA other downstream 1705436 23538396 ~ 23538863 (+)
G23135 NA other downstream 1741632 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 2040061 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2671695 24504638 ~ 24506125 (+)
G24123 NA other downstream 2717565 24550525 ~ 24552435 (+)

Expression


Co-expression Network