G21827 (twf1)


Basic Information

Item Value
gene id G21827
gene name twf1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22212443 ~ 22215444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU25349
CAGAGGTGGTCAAAAGCTAAATGTCACATTTGCACTTTACAAACTACATATAACCAACAACAATCAGTAATAAACACAAAACATGTTTGCTAAGGGTCTGTTGTGAGTCGTGAGCATGAAGAGACTTGTCATTGACATGAACGTGCAACATAATTAGCAAACGGAAGATGACATCTGTGTGTGAGAGGAGTTGCTTACAGGAGAGTGGTCAGGTGACCAGGCCATGAAGATCCACTCATAGCCCTGGTTGTTGGAGGAGTCCAGTCGGTACAGGATATAAGATGGCAGGTCGTCCTGTAGTAGAGGCAGGACTAACGAGTCATACTCTTGGTCCCATGTCTTTGATGCTTGCCTGGTCTCGCCCAAAGCTAGCTGCTCATCCTCAATCACAATCTTTAAGAGTCGATATTGGTCTCCACACCTCGCACTGGCAAAGATGTCCTTCACGTCGTTACCAGCTTGTATGCCCGTTTGGTG

Function

symbol description
twf1 Enables ATP binding activity and actin binding activity. Involved in regulation of actin phosphorylation. Located in cytosol and nucleolus.

NR:

description
twinfilin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25349 True 477 lncRNA 0.39 3 22212443 22215444

Neighbor

gene id symbol gene type direction distance location
LOC110508721 LOC106573612 coding downstream 8818 22111004 ~ 22203625 (-)
LOC110532081 LOC106573605 coding downstream 479157 21686077 ~ 21733286 (-)
LOC110508066 LOC106613744 coding downstream 608014 21587517 ~ 21604429 (-)
LOC110507736 LOC106573601 coding downstream 646720 21535882 ~ 21565723 (-)
cirbp LOC106573597 coding downstream 843555 21362992 ~ 21368888 (-)
LOC118966627 NA coding upstream 10761 22226205 ~ 22231598 (-)
LOC110508988 NA coding upstream 177534 22392978 ~ 22400323 (-)
LOC110509244 LOC106573616 coding upstream 219231 22434675 ~ 22437595 (-)
LOC110509312 NA coding upstream 247951 22463395 ~ 22487550 (-)
LOC110509621 LOC106573620 coding upstream 277116 22492560 ~ 22574938 (-)
G21830 NA non-coding downstream 94774 22117161 ~ 22117669 (-)
G21223 NA non-coding downstream 255962 21956271 ~ 21956481 (-)
G21221 NA non-coding downstream 256628 21954662 ~ 21955815 (-)
G21212 NA non-coding downstream 261481 21950710 ~ 21950962 (-)
G21204 NA non-coding downstream 273040 21939108 ~ 21939403 (-)
G21900 NA non-coding upstream 33389 22248833 ~ 22249067 (-)
G21904 NA non-coding upstream 37518 22252962 ~ 22253252 (-)
G21913 NA non-coding upstream 49772 22265216 ~ 22265429 (-)
G21917 NA non-coding upstream 52318 22267762 ~ 22267965 (-)
G21954 LOC106573613 non-coding upstream 102038 22317482 ~ 22317947 (-)
LOC118945319 NA other downstream 1123193 21085298 ~ 21089250 (-)
G20266 NA other downstream 1412435 20799120 ~ 20800008 (-)
LOC110502937 ccl25 other downstream 2579826 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 3326791 18876547 ~ 18888907 (-)
G21993 NA other upstream 166426 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 624401 22839845 ~ 22843305 (-)
G23394 NA other upstream 1408582 23624026 ~ 23624349 (-)
LOC110511130 LOC106573631 other upstream 1607256 23821656 ~ 23861029 (-)
G24542 NA other upstream 2007463 24222907 ~ 24226490 (-)

Expression


Co-expression Network