G21620


Basic Information

Item Value
gene id G21620
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22392636 ~ 22395271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU25131
ccttatttcgctttgtcattatggggtattgtgtgtagattgatgaagatatttttttaaatcaattttagaataaggctgtaatgtaacaaaatgtgcaaaacgtcaaggggtctgaatactttcctaatgcgttgtactgtatgttggcatGTTTCATAAAGTGATTTGCTTTCTCAAGTGGCAGTTATATGGGTTGAATCTTGGACTTACCTGGTCATGGACTTACCTGGTGAGATGATTAGGGTATCTTGTGGCATTCTTCAGTCAGGGTTTGTCCAATAGAACAATCAAGCAATGTAAGCATTAACTGATTCCAAAGAGAATAACTCACCAAAGACAGAAAATAATTGAAATTTATTGCACAGATTTTGTTATTCAAACACAGTTTGGGAGCAGTAAAGTTCCACACAAAATAGATATAGCAACAATGGTAACATCATTAAGTAATGATGATTGCTTTATAAACAGCTGCAACCCTTTTTGGGGTGAAGCAGCACTAACCAACAATAATGTGATGAATTGAACACTccaacattttagtaatttatgcCTATTTGTTGCTTATAAACACAATTTCCTGCAGTTAGTGGAGGAGTCCCAATGAGAGCGATCTTTGTTGACGTGACCCTGAACGAAAGACATTTGTTAAAATGACAACAACATAAACATATTTGTTTAAAATGACAACAACATAAACATATTTGACTTTGGCCTGAGGCAAATCCCCTAAACCTGTCACCCTGGGGTCAGATGGTAGTAACATCATTGAGCTTGTGTTTTCTGATCCAGCCCATATGCCGGTGTAGCACTGATCAACTGGACTAGCTAGGACTTGGAGACTTGGAGGTTCCCTCAGTCTCAGTTCTTCAAGCATGGTTCATGTCATAGGTTGGAAACCAGAGCAGGATGCTAATGTTACATTTGGTCCCTGTTAGTGGTGGTTTATTCATTAAGCCAAACCAAATTATGGTAATTGATGAGTTGTATTGGTCAGTATACTTGTAGGATTTGGCATGTTCGGAGGGTTTTGTCCCAGGATTTGAATAAAAAACAACTGTAATATTAGTATGCTCTCCATCAACATTGATGTGTCCAATATTTATTTCTTGCAATTTAGAGAGCAATGAAATAATGCTGCCATGCCTCAATAGAAACAAATGACAGAGAAAAGACACGGCTTGTATACAAAGATTGTTTTGTTTTTATCCCAGATTgcccaacaaaacacacacatttcttaacGTTTGGCTGAGAGAGAACTATACAAGATATTTATATAGTACATATGGAACATAAATATTAGGTGTCAGCGATGGAGAGTCTTTCATCTAAACCAGTGAACCCTCCTGCCTATATAGACATCTGCGATCAAGCACGGTTGATGTCAAACTTCAAAGTTTGATATATATTTGGCTCTATGTGGCCTAGTCCTGTACATTAAAGGCTCGTTTAGACATAGCCACTAATGCAGTCTCAGTGACGGAGGGTGATGACATAAAATAGCAGGAGTTGACTCGCGACCACAAAGAAACTGGATACAGAGCAGAGcaagtggagagagagtggggaaaaGATTGAGAGACTAGTTTAGGCAGATTTTTGTTTCGCTGGCGCTACAGCTGGGGATGGATGCAGGGGGATAAAATAAGTAGAGATCTGGAAGCGTTTAAACTAGGCTTTCCCTGGCTTGTCCAATGATCGGGAACAGGTCCTCAACTGGCATTGCAACGCATCTGAGAGAAAGATCTCTAAAGCTTATGGGGTGAATCCTCTCTGAAATGGGACTTCAATGCATGTTTCTCTCACCTCGTCTCTACTGGAGATTATTCATGTTGGGGCCTGTCGGTGGCTGTCATGTTGATGTACCTTGGTAGTTGGACTGTACAAACTCTTCATAtttgtctacattttttttctctccaaactTGGTTCAGTGGGAAAGTGTTTGAGGTTGCCCTAGAAGAATGTGGTAACCCACTCAAAATACGATATCTCCCTAGAAAGTAGAGCTTATTACTTTTTACCTCACATCTTACCAAGACACCCAACACCGCTGCTTTCTTGTGTGGCGTCAGTTAGCAGTGCAAGAGACGTCAGTCAGTGTATTACTCTTTATATGAAGACTTCCAGGCTCTACCTTTACTGATGTGGGTCCTGTACTGCACGTTCCACATTAGCTACCTGGCTGGCAGGTCTGTTTCTACTTGTGCATCTGTCTCTCAGAGCTTTAGGGCCGCTGGTTCACAGATGGTGAAGACATTCCAGCAAGTCAATGTCTGAGCCTACAGTACTCATCGATGTTACATATTCAGCCCCAACGTCTCCCGCCCATCCCTTTGTGATTAAACGACACCGCCGTTtacatcacacaatgttcagtCCTCTTATATCATCCGCCAGAGTAAATTCCAAGCACAAACTCATTTTGTCAATGAGGTCTGGAGGGCCGCAATGGATATTGGTTATATTTCCTCGCaatcacattttttaaattggaATCTATCCATTGATTTTTGAATTTTCTATGCTCCCTCACTGTCTTGTTTTCATTTGGGTGATTATTAGCGAGTtggacacagtcaagaaactctatcatttctacacagtttgGATTTgcttttagtcattttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25131 True 2636 lncRNA 0.37 1 22392636 22395271

Neighbor

gene id symbol gene type direction distance location
LOC110508905 twf1 coding upstream 166532 22212332 ~ 22226104 (+)
LOC110508655 LOC100380741 coding upstream 284779 22024629 ~ 22107857 (+)
LOC110508592 LOC106613751 coding upstream 481120 21809564 ~ 21911516 (+)
LOC118946025 LOC106604946 coding upstream 565507 21819189 ~ 21827129 (+)
LOC110508526 bsg coding upstream 589733 21792456 ~ 21802903 (+)
zgc:110339 LOC106573615 coding downstream 37039 22432310 ~ 22435150 (+)
LOC110513869 LOC106560949 coding downstream 225395 22620666 ~ 22623478 (+)
LOC110510174 LOC106573623 coding downstream 318403 22713674 ~ 22869379 (+)
LOC110511054 NA coding downstream 1392222 23787493 ~ 23793379 (+)
LOC110511247 LOC106573632 coding downstream 1409743 23805014 ~ 23822354 (+)
G21619 NA non-coding upstream 57 22391849 ~ 22392579 (+)
G21618 NA non-coding upstream 1018 22391401 ~ 22391618 (+)
G21614 NA non-coding upstream 10485 22381838 ~ 22382151 (+)
G21608 NA non-coding upstream 24947 22367349 ~ 22367689 (+)
G21598 NA non-coding upstream 35564 22356842 ~ 22357072 (+)
G21625 NA non-coding downstream 4399 22399670 ~ 22400144 (+)
G21653 NA non-coding downstream 72499 22467770 ~ 22468675 (+)
G21650 NA non-coding downstream 78673 22473944 ~ 22474284 (+)
G21656 NA non-coding downstream 81944 22477215 ~ 22487478 (+)
G21744 NA non-coding downstream 180295 22575566 ~ 22576163 (+)
G20773 NA other upstream 824448 21567545 ~ 21568188 (+)
G19400 NA other upstream 2082738 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 2115741 20276590 ~ 20276895 (+)
G19359 NA other upstream 2149761 20242645 ~ 20242875 (+)
G19083 NA other upstream 2476804 19915586 ~ 19915832 (+)
G23109 NA other downstream 1143125 23538396 ~ 23538863 (+)
G23135 NA other downstream 1179321 23574592 ~ 23574995 (+)
LOC110511358 LOC106573633 other downstream 1477750 23872914 ~ 23905175 (+)
ccl4 ccl4 other downstream 2109384 24504638 ~ 24506125 (+)
G24123 NA other downstream 2155254 24550525 ~ 24552435 (+)

Expression


Co-expression Network