G24972


Basic Information

Item Value
gene id G24972
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24918667 ~ 24962734 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU28799
ttcgatataggccgatagttttttatattttctgggtcaaggtttggctttttcaagagaggctttattactgccacttttagtgagtttggtacacatccggtggatagagagccgtttattatgttcaacatagtagggccaagcacaggaagcagctctttcagtagtttagttggaatagggtccagtatgcagcttgaaggtttagaggccatgattattttcatcattgtgtcaagagatatagtactaaaacacttaattgtctctcttgatcctaggtcctggcagagttgtgcagactcaggacaactgagctttgaaggaatacgcagatttaaggaagagtccgtaatttgctttctaataatcataatcttttcctcaaagaagttcatgaatttatcactgctaaagtgaaagtcatcctctcttggggaatgctgctttttagttagctttgcgacagtatcaaaaaggaatttcggattgttcttattttcctcaattaagttagaaaaataggatgatcgagcagcagtaagggctcttcggtactgcacagtactgtctttccaagctagtcggaagacttccagtttggtgtggcgccatttccgttccaattttctggaagcttgcttcagagctcgggtattttctgtgtaccagggagctagtttcttatgagaaatgtttttagtttttaggggtgcaactgcatctagggtattgcgcaaggttaagttgagttcctcagttaggtggttaactgatttttgtcctctggcgtccttgggtaggcagaaggagtctggaaggacatcaaggaatctttgtgttgtctgtgaatttatagcacgacttttgataatccttggttggggtctgagcagattatttgttgcaattgcaaacgtaataaaatggtggtccgatagtccaggattatgaggaaaaacattaagatccacaacatttattccatgggacaaaactaggtccagcgtatgactgtgacagtgagtgggtccagagacatgttggacaaaacccactgagtcgatgatggctccgaaagccttttggagtgggtctgtggacttttccatgtgaatattaaagtcaccaaagattacaatattatccgctatgactacaaggtccgataggaattcagggaactcagtgaggaacgctgtatatggcccaggaggcctgtaaacagtagctataaaaagtgatttaccacaggtggactcca

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28799 True 1267 lncRNA 0.42 2 24918667 24962734

Neighbor

gene id symbol gene type direction distance location
LOC118956210 NA coding downstream 5972 24910984 ~ 24938701 (-)
LOC110517792 LOC106573801 coding downstream 13023 24898911 ~ 24905644 (-)
znf276 znf276 coding downstream 53509 24853824 ~ 24865158 (-)
cdk10 cdk10 coding downstream 99424 24808572 ~ 24819243 (-)
gbrl2 gbrl2 coding downstream 207205 24697687 ~ 24711462 (-)
LOC118956655 NA coding upstream 49447 25012181 ~ 25020388 (-)
LOC110519016 LOC106573687 coding upstream 81711 25044445 ~ 25083238 (-)
LOC110519226 LOC106573688 coding upstream 126562 25089296 ~ 25112992 (-)
kiaa0513 kiaa0513 coding upstream 191991 25154725 ~ 25172586 (-)
LOC110519951 LOC106573692 coding upstream 410096 25372830 ~ 25381869 (-)
G24942 NA non-coding downstream 20840 24897610 ~ 24897827 (-)
G24940 NA non-coding downstream 21680 24896772 ~ 24896987 (-)
G24917 NA non-coding downstream 61121 24857246 ~ 24857546 (-)
G24915 NA non-coding downstream 63048 24855391 ~ 24855619 (-)
G24851 NA non-coding downstream 84078 24831392 ~ 24834589 (-)
G24959 NA non-coding upstream 35812 24998546 ~ 24999010 (-)
G24945 NA non-coding upstream 78826 25041560 ~ 25042769 (-)
G24948 NA non-coding upstream 80169 25042903 ~ 25044176 (-)
G25011 NA non-coding upstream 103156 25065890 ~ 25066926 (-)
G24952 NA non-coding upstream 123340 25086074 ~ 25087355 (-)
LOC110514811 ccl8 other downstream 365105 24552392 ~ 24554074 (-)
G24542 NA other downstream 692177 24222907 ~ 24226490 (-)
LOC110511130 LOC106573631 other downstream 1092176 23821656 ~ 23861029 (-)
G23394 NA other downstream 1294318 23624026 ~ 23624349 (-)
G25115 zfpm1 other upstream 317858 25280592 ~ 25281030 (-)
G25117 zfpm1 other upstream 318870 25281604 ~ 25282018 (-)
LOC110520292 gnao1 other upstream 2673354 27631001 ~ 27781768 (-)
G28870 NA other upstream 3094709 28057443 ~ 28066305 (-)
G29355 NA other upstream 3741153 28703887 ~ 28704356 (-)

Expression


Co-expression Network