G25120 (zfpm1)


Basic Information

Item Value
gene id G25120
gene name zfpm1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25283523 ~ 25287060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU28965
GTACTCAGGTCCAATCACCTTCCTTCTACCCAATAATAATACCAGTTTAAAACTTACATCAAATCGTTTATCTGGCAAAATAGGCTGTACCTAATGACCAAATACTGGAGGAAAACAGAAAAGTTCAAACTTTTCCCGATGAATAAAGAGCAGAAGAAAGAAATGCTGACAATAAGGAACATAAGGTTCAATGTCATCCCAGTGATTACTGTGAAAGATATTACATATCTACACTTACAAAAACACCTTTACACGCCGAGATTGAAACAGTTCCTTTGAACAGtatgaaaaatataaatattttcagACGCTAGGTAGATTTCTGTTGACTTTAAATCAGTGAGGACTCAAAGATAAATAGTTCACATGTTTTCCTTCCATTAAGAGAATGTAATTGTGGTGTAGGAAAACCAAATCTATCCATTTGCAAATATTTCCTCTGTAATTGGTAGGCTAACCATGTGATACTCATTTCTGTAATTCAGCTAAAATGCTTTAGCTTTCTAGTTAGCAAAACAGCCAGTGTTCAAACAAAAGCATAAAGAATTATTTTAAAACATCATACACTATGCACAGGTAAGTAGAAATAAAAGAGTGGAGATAGTCAGCTCCACTAGAGGGCCCTGGGGGACAACAGTTGTCCCCACTCACTGACTGATCTAGAGCATCAACAGCTCAGGAAAAATGAGTTTCATCATCAGCAAGAAATGCTCCAAACAATCATAATCAAATAAAGATGACTGTAATACAAACAATTCAATTAAACTTGCTCAGGAGACTAAATGTTGACTCTAAAGTCACATTTTCAACATTCTGTGGACCCTGGAGGTGAGAAAGAGGGCTGGGTTTCAGTTATTGAGGTGGGTAGGAAGGGATACGTGGGCACAACTGTGTGTGCAGGTAGCGCATCTCAGCTCTTAGTGTAATAGAAACTTTGACCCATAAGGAGAAATAGTAACAATACCGGAAGCGGGAAGCGACCCAGTTCCTGGCGAGTAACAGTCACACTTTCAAACACATACAGTCCAGAGATGGTGCCATGCCTTGGTGGCACTGACAAGAATGGATAGCTGGGTTTGGGCCTTGGAGGGGACACAGACTGGGGCTCCATTCACTTGACGTGCTCAGCGCTGTGGGAGGAACAGTAGTACTTTTTGTGGGCTATGAACGTGGACAGGCTGCTGAACTTGATATTGCACAGCCGGCAGAAGCGGGTGTTACCGTTCTGCACAGGGGGGATCAGGAGGGTCTTGGGTGTGGGAGGGGCCGGAACAGGGAGTGGGAGACCCAGTGTGAGGGACGCCTTGTCTGGGAGCAGGGTGACAGCAACCTGGTGATTCAGAACCCCCACCTCTCTCAGCACCTCAGGCACAGGGGAAACAGTCAGGGGGAGGGACCTGGTGGGAGACACAGCTGGAGGGGCTGCCTTGGGGGAGCTGCCACCCCCGGCATGGTGTCCCAGGGGGCTACCGTTCACcaggggagaggatggggagacagtGTCCCTTCTGATCCGGCCATTGATGCTGTCCCTGCAGGCTCGGAGGACCAGCTTGGGCGGAGTGGCAGGGGTCCCATCCCTAGGGCTCAGGCTGGGGCTGATGACGGCTGGCTGGCCCTCCAGGCTCAGGACCAGGCCATGCATGGATCTGAAGTGCTCCACCAGGTCACAGGTCACCGCCCTATTGGGAGGGCAGTAGGGGCAGACCACAGAGGGAGAGCCTGGGCCTTTGGCTGCAGGGACACTGTAAGGTGATGTAGcctcagagccagagccaggtaaGGCAGAGAGGTGAGGGCTGAGCGAGGCCCCCCGAGGAGCCTTCTCTGTGAGCAGCCCTTTGGCCTCAGAGTGGACATCTGATCGCTCCAGGGCCCTGCTCTTGGGGGAGATGGATGCTGGTCTCTTCAGCCTATGGAGCGTCTCCAGAGTGTGGGGCTGCAGGGTGGTGGCTGGGCAGTAGTAGGTCTTGTGGGCCAGGTAGTTCTCAATGCTGTTGAAGCTAATGCTGCAGGCGGTACACTTGTGGTAGTCAGTGAGGGGCAGAGAAGGGATGCTGCTGCCCCGCGGGGCCTCCCTTAGACGGGGCCTCTTGCTCAGGTCAATGGGGCCGTCTCTGTCAGGGCTGGTACTACGGGAGGTGGCTGGACGCAGGCCCAGAGctagggctgggactggggacTCCAGGACCCGCTCCACTGAGGCAGCAGCCTCCTGCTTCACAGCCAGGCTCAGgccaggggcagagagagaggcagcagcagcgTTGGCCAGGGCCTCAGTCCGAGCCATGTGGATCTCATACATCTTCTTCCTCTTGCGTGTTCGGATGGGCTGAGGCAGAAAGGTAGCTTTGCCGGCGGTTGACCGCTGGTTGGACGGATCGTGGCGCGATGCGCAGTAGAAGCGTTTGTGGACTGTGTAATTCTCATGGCGGCTAAAGTGGATGTTGCAGGCCTGACAGAAGGTTCTGGTGGGGTCGTCCTCCTGGTCCTCTGCTGAGCCGCTGGGACTCTGGCTGCACTCGCTGGCccggcctcctcctcctccaccctccccctcagaggaagaggaggacacagCCTCCTTCACCCCAGGGTTCTCACTCTTCACCTCCACCAGCTTGCCCTGCGTGGCGGTGCTGCCTGGAACAGGATCTGAGTCACTGGGGGAGGCTGAGGCTGCCCGACTACCTGATCCAGCCTGAGGGGATGAACCGTGTCCAACTGAGGGGACTGTGGCCCCCGACGCCCCCTCCTTCACTGGGCCAGCCACGTCTCCGTGCTGGTGCCTGCTGGAGCAGTACAGCCTCTTGTGAACATAgaagttgttgatgttgttgaagTTGATATCACATTCGAAGCAGGTGGCCCCCTTCTGGACAGTGGTTGTAGTGCCAGCGGGGTAGAAGGCTGGCGCTGCCCCAGGGGGGACCTGGCCCTGCTTCAGCCGGCTGTGGACCATCTCAGACATCTTAGCCAGTATCTCTGAGGCCTGGGGTAGGATGGCTGGTTCCTGGCTGAACATGTACTGGGGTAGGAACACGTCTTCTCCAGGGAGCACTGAGCCAGCTCCTCCCAGATGGGCAGGGCTGGAGCCAGGGGTGGGGCTGGTTGGCTCTGCCTTCACAGCCACAGCAGAGGGACTCCTAGGGGAGGTGGAGGTCTGAGAGGAGCCTGTATCTCTGTGTCCACGGCTCTTCTCCACCcgctcctcctccatctcctcctcctgcccctcATTCTCAGAGTCCGAATGCGGCTCCTCTTTAATCCTGATGTCTGTGGGGAGCTGCTCAGGTGGGCTGCAGCCTCGCGGGGTGGCTGAGCTCCCATTGGCCCCAGGGCTGGAGGATTCAGGGTGGGGTACGCAGGCGGGGGGCTCCCTGTCAAGGTGCTCAGGGTGGTCGGCCGAGGAGGGGGTGGTCTGGCGGGGTGTGGGGCTCCTCTCGGCCGGGACCCTCACCTCCAGGTGTGTGCGAACGTGCTGCTGGAGCTGAGCAGGCGAGTCTGTGATGTGACCACATACCTGACATTT

Function

symbol description
zfpm1 Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Acts upstream of or within heart looping and hemopoiesis. Predicted to be active in nucleus. Is expressed in several structures, including intermediate cell mass of mesoderm; lateral plate mesoderm; myeloid cell; otic vesicle; and pericardial region. Orthologous to human ZFPM1 (zinc finger protein, FOG family member 1).

NR:

description
zinc finger protein ZFPM1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28965 True 3538 lncRNA 0.55 1 25283523 25287060

Neighbor

gene id symbol gene type direction distance location
kiaa0513 kiaa0513 coding downstream 110937 25154725 ~ 25172586 (-)
LOC110519226 LOC106573688 coding downstream 171292 25089296 ~ 25112992 (-)
LOC110519016 LOC106573687 coding downstream 200285 25044445 ~ 25083238 (-)
LOC118956655 NA coding downstream 263135 25012181 ~ 25020388 (-)
LOC110518671 klhl36 coding downstream 330209 24944908 ~ 24972465 (-)
LOC110519951 LOC106573692 coding upstream 85770 25372830 ~ 25381869 (-)
LOC118959932 chtf8 coding upstream 172682 25459742 ~ 25463093 (-)
LOC110520001 wfdc1 coding upstream 186476 25473536 ~ 25485212 (-)
LOC110520008 kcng4 coding upstream 250055 25537115 ~ 25566593 (-)
LOC110520015 LOC106573699 coding upstream 392849 25679909 ~ 25712438 (-)
G25118 NA non-coding downstream 857 25282125 ~ 25282666 (-)
G25114 NA non-coding downstream 4836 25278465 ~ 25278687 (-)
G25110 NA non-coding downstream 9754 25273542 ~ 25273769 (-)
G25042 NA non-coding downstream 104850 25178355 ~ 25178673 (-)
G25040 NA non-coding downstream 106775 25176513 ~ 25176748 (-)
G25119 NA non-coding upstream 427 25287487 ~ 25288484 (-)
G25130 NA non-coding upstream 8005 25295065 ~ 25295323 (-)
G25131 NA non-coding upstream 8283 25295343 ~ 25295645 (-)
G25132 NA non-coding upstream 8772 25295832 ~ 25296087 (-)
G25145 NA non-coding upstream 21657 25308717 ~ 25309109 (-)
G25117 zfpm1 other downstream 1505 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 2493 25280592 ~ 25281030 (-)
LOC118956210 NA other downstream 344822 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 418689 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 2349028 27631001 ~ 27781768 (-)
G28870 NA other upstream 2770383 28057443 ~ 28066305 (-)
G29355 NA other upstream 3416827 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 3993216 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 5844833 31131151 ~ 31132900 (-)

Expression


Co-expression Network