G26216 (LOC106573700)


Basic Information

Item Value
gene id G26216
gene name LOC106573700
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25712544 ~ 25732197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU30120
CTGATATTGCCTGGGGTTGTTCGGCATGCAAAATTACTTgtagatcaatgactgtcaacacaGTTACATGCTTAGTTTGACAGTGAAGGAGAGGACACATAATTTGTCACAAAAGATAGGGTAGAAAGTAATATGAGAATGTTTTTAGTGAACCAGCGATTCGTAAAATTTGAATAGATTTCCTGACCAATGCATGCCTCATTTTGATATTTTTGGGGTCCGCAGACCGACGCACTCGtatcttaaacatttgaaccGGGGACCGATGAGTATcatacagaaatagaaaacatttaGTAAAGTGCCGTTAGATTACCTTCATGACCCTTGTCCTTCTTTGACTTGCGGTTCCTTGACCCCCTCGATCTCCTCCACGCCTGCCTGGGTCATGAGGTCAGCAATGTTCTTCTCCAGGTCATCGATGCGGGTGCTCATCTCATCAAGATACCAAGCCCATACCAAGTTACCTAACAATGTTGAGGATATTTCTTCCGATGATCTGGTCTGACATGGTCTGGAACTTATCCTGCATCTGTTGCAGCAGCGTCTGGACCATTGGTAAGGTCCTGAACTGACTTTGGATCAGTGTCTGCCATATTTTCCCTATGCACGACACGCGTGTTATTAAGTGGTGTAAAATGAACTCTAGCTAAATTAGCTACCTTGGGCAAAAATAAATACAGGATCCCTAGCTCTACCACGTAAATCCAGATATGTCAGTCAGCTGTTTTTGCAAAACACGTATCGCGAGAACACTGAA
>TU30119
TTGTATTAAATAACTTTAATAGAAGAAAATCTGTTGAATTTTGAATGCATTCCACTTGGCACAGTGCTGCTAATATCACTGGCTTCTACTGTATACTTCAATCAACCATTACTAACAGGGCTGAAAAGTTCTGAGGGAAATACTCATTTACAAATAACACATCTTCAAGTCACTACATTAGAACTGTTACTTTTATTACAATAGTCAATATAAAAAAgcatttcacaacacactaaatCAAGATAGTTCATGGTTATAGTGGAAGAGTATGCTGCTCCTGAAGAAAGTCCTTGACAGCTTGTCGTCTGGCAACCTTCATGACCCTTGTCCTTCTTTGACTTGCGGTTCCTTGACCCCCTCGATCTCCTCCACGCCTGCCTGGGTCATGAGGTCAGCAATGTTCTTCTCCAGGTCATCGATGCGGGTGCTCATCTCATCAATTCTTCCGATGATCTGGTCTGACATGGTCTGGAACTTATCCTGCATCTGTTGCAGCAGCGTCTGGACCACATTGGTAAGGTCCTGAACTGACTTTGGATCAGTGTCTGCCATATTTTCCCTATGCACGACACGCGTGTTATTAAGTGGTGTAAAATGAACTCTAGCTAAATTAGCTACCTTGGGCAAAAATAAATACAGGATCCCTAGCTCTACCACGTAAATCCAGATATGTCAGTCAGCTGTTTTT

Function

NR:

description
heat shock factor-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30120 False 760 lncRNA 0.30 3 25712544 25714758
TU30119 True 688 lncRNA 0.38 4 25712572 25732197

Neighbor

gene id symbol gene type direction distance location
LOC110520015 LOC106573699 coding downstream 106 25679909 ~ 25712438 (-)
LOC110520008 kcng4 coding downstream 145951 25537115 ~ 25566593 (-)
LOC110520001 wfdc1 coding downstream 227332 25473536 ~ 25485212 (-)
LOC118959932 chtf8 coding downstream 249451 25459742 ~ 25463093 (-)
LOC110519951 LOC106573692 coding downstream 330688 25372830 ~ 25381869 (-)
LOC118966628 NA coding upstream 758 25732955 ~ 25747219 (-)
LOC110520038 LOC106573702 coding upstream 163019 25895216 ~ 26501491 (-)
LOC110520062 NA coding upstream 1194101 26926298 ~ 26939324 (-)
LOC118966748 NA coding upstream 1411163 27143360 ~ 27143413 (-)
LOC110520098 LOC106573710 coding upstream 1473714 27205911 ~ 27215251 (-)
G26230 NA non-coding downstream 44987 25666939 ~ 25667557 (-)
G26217 NA non-coding downstream 59149 25651058 ~ 25653395 (-)
G26164 NA non-coding downstream 127680 25584421 ~ 25584864 (-)
G26149 NA non-coding downstream 153204 25559027 ~ 25559340 (-)
G25395 NA non-coding downstream 198855 25513458 ~ 25513689 (-)
G26328 NA non-coding upstream 134047 25866244 ~ 25932705 (-)
G26538 NA non-coding upstream 465955 26198152 ~ 26245155 (-)
G26573 NA non-coding upstream 516650 26248847 ~ 26340716 (-)
G26654 NA non-coding upstream 641446 26373643 ~ 26374041 (-)
G26760 NA non-coding upstream 774475 26506672 ~ 26506938 (-)
G25117 zfpm1 other downstream 430526 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 431514 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 761157 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 773843 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 847710 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 1903891 27631001 ~ 27781768 (-)
G28870 NA other upstream 2325246 28057443 ~ 28066305 (-)
G29355 NA other upstream 2971690 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 3548079 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 5399696 31131151 ~ 31132900 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G47624 hsbp1b,hsbp1a,LOC103023435,LOC108429110,LOC108271362,LOC107553992,LOC107583924,LOC107561694 misc NC_035901.1 CM008304.1 37246296 ~ 37277148 (+)