G27253


Basic Information

Item Value
gene id G27253
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 26941309 ~ 26950750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU31228
ATTAGATCTTGATCATCACTTACTCCAGCCAAATTTTTGGAATTCATTGGAAGATGGATAGAGAGACGGTCATATATGTTATGCCAACTAGGTTTCAGCAAATTAATCGAGAGTTTCGGATTAGGTTTAAGAAAAATAAAAGTACCACGTATATTTTATTGGATAAATGCAAATAAAAAACAATAGATAAATTGATTGATTGGTAAATAAAAGGGAGGATATGTCTCTTCTAAATATCCACATGTATTTTACAGTTAATAATCAGAATAAAATTCCTTTATAGTTTTTCTGGTATAGTTTCAGTTTAGCCACATTTCGACCGAAACAAGAACAAGAAGCATCAGTAGTTAAGGGCAGCCTCATAATCCACACACAATCACTACGTTTTAACATTAAAATACGGAAACACAGATATTCAACCAGATTCTGTTAATCACATATTATATCATATAGAAACTTTCAGATTTTATATATGTCCAGTATACAGCAAGAGTCTTTAGAGTTTCAGCAATCATCCAATCATGACAAAGCAATCATGACAAACCAATCCTTACTGGGTGGAGAAGGCTAGAAAGAAGAGCAGCAGAGGGGAGGATAAAAGAACATgagaggagtaaaggagagaAGGAATATTGAACAGGGGATCAATAAACATAAATAAATGGGGTGGGGAGTGATGAGGACTTGATGGTACAGTACTGTATCTGTCTGGACTTGAAATGACAGAAGTGGATGGGATGTAGAAAATGTATTGTACACAgacataaaacaaataaaaatggaGTCACAGAAAATGGATGGGGATGGATGGACATACAGAATGTGGAAATATGGTCGATGCAGCTCTCTGACACTGTAGGTAATATAGACACATTCCTCAAAGCAGATGCAGAAAGAGATGAAGCGGGGGAAGGGGTGGACTTGGCCTCTAGGTTTTACTCtctttaatgtttttaaatgataGTATTTCTGAGGATAAAAAAGTTTTGGCTGTCCAGAGCTGTAGTCAGGCAgcggagtgagtgagtgtgttggagAGCCTGCCCAACTAATTATACCCTACTCATCTCTTTAACTTCCTCTCCCATatatttttctctcctcttctccctctttctatatctttcatcatctctctctctctgtctccagtctCCCAAGCAGCCGAGCTCAGAAGAATTAGTCCCTCCAGTCTCCTCTCTTCTACATGGGGAAGACCAGGAACCCAGAGAATGTGGAGTACTTCCAGCCCCCCATGAGGTTTCCTCTCTCTAGTTTGAGGTAGGCTCGGTCCCCCTTCTCCATTTGGATCAGCACTCCGTTACTGGCAGCCTCGCGAGTCACATCCTGGTCCCCAGCGAAGGCTGAGATCACAGGCCATCCATTATGCATCAGGCTTACCTACAGGAGAGGACATATACTACAGTTACAGATGGTTAAATACACCCACAgctccacacacacacacacacacacacacacacacacacacacacg

Function

NR:

description
Cerebellin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31228 True 1497 lncRNA 0.41 2 26941309 26950750

Neighbor

gene id symbol gene type direction distance location
LOC110520062 NA coding downstream 1985 26926298 ~ 26939324 (-)
LOC110520038 LOC106573702 coding downstream 439818 25895216 ~ 26501491 (-)
LOC118966628 NA coding downstream 1194090 25732955 ~ 25747219 (-)
LOC110520015 LOC106573699 coding downstream 1228871 25679909 ~ 25712438 (-)
LOC110520008 kcng4 coding downstream 1374716 25537115 ~ 25566593 (-)
LOC118966748 NA coding upstream 192610 27143360 ~ 27143413 (-)
LOC110520098 LOC106573710 coding upstream 255161 27205911 ~ 27215251 (-)
LOC110532124 LOC104966864 coding upstream 275413 27226163 ~ 27299859 (-)
LOC110532131 aars coding upstream 365922 27316672 ~ 27321126 (-)
LOC110520123 LOC106573712 coding upstream 381798 27332548 ~ 27342006 (-)
G27257 NA non-coding downstream 1131 26939946 ~ 26940178 (-)
G27222 NA non-coding downstream 16644 26924451 ~ 26924665 (-)
G27204 NA non-coding downstream 38263 26902829 ~ 26903046 (-)
G27124 LOC106573705 non-coding downstream 192547 26737669 ~ 26748762 (-)
G27076 LOC106562530 non-coding downstream 284737 26656353 ~ 26656572 (-)
G27271 NA non-coding upstream 5671 26956421 ~ 26956742 (-)
G27273 NA non-coding upstream 6167 26956917 ~ 26957213 (-)
G27294 NA non-coding upstream 22996 26973746 ~ 26973945 (-)
G27297 NA non-coding upstream 25229 26975979 ~ 26976214 (-)
G27414 NA non-coding upstream 129111 27079861 ~ 27080062 (-)
G25117 zfpm1 other downstream 1659291 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 1660279 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 1989922 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2002608 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2076475 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 685338 27631001 ~ 27781768 (-)
G28870 NA other upstream 1106693 28057443 ~ 28066305 (-)
G29355 NA other upstream 1753137 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 2329526 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 4181143 31131151 ~ 31132900 (-)

Expression


Co-expression Network