G27476 (LOC106573708)


Basic Information

Item Value
gene id G27476
gene name LOC106573708
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27132927 ~ 27135021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU31456
GACAAACAGTTGGCCTTTATTAACTTTACCAGCCTGTGGAAATCAAATATACACCCTGTCTTTCAAGTAGCCGTGAGATACCCACAGAACGCCTATGCCCTCATTGGTGATGTCACTGCATTTCCTTTCTCGTAGAAATCTTAAAAGGGAAAAAAATGTCAAACATCAGTGACTGATATCCTTTACATTATATAGAGAAGAAACAACAGAAAGGGGACTTGGATACAGAGTCCAAAGTTTTACCCCACTGGTAGAAGACACTGACAAACCTCTCCAAAAAGAGTTGGATGTTAGTTATACACAATGGATGCATCTTGTTATACAAAACTAAAGCTATACACAACGGAAGCAAATTGTTTATCATAATAGCCAGGCCACTCatctgtctgtttttttttttttagcaataaGTGCTCCAGTAGCAATTAGCCCCTGACAGCTTGGTTCACAGTGACCTCTGCTGGCTGGTGACTGGggtcttatcaaatcaaattttgtcacatgcgccgaatacaacaggtgtagacattacagtgaaatgcttacttacacgcccttaaccaacaacgcagttaagaaaatacctacaaaaaagtatgagataagaataacaaataattaaagagcagcagtaaataacaatagcgggactatatacagggggtaccggtagagtcaatgtgtcaatgtgcaggggcaccggtgttgaggtaattgaggtaaacatgtaggtagagttatttgTGATCGTTGTTCATTGAACAAACAATGAATAATGGGTTTGCTATGTTACCATTACAAAAGGTAGTGACTTGTACAAGAGTGGCCAGGGTGTTCCAGATCATTGAGTAACATGGGTAAGTTGGCTCTGTTTCTGGTCTCTGAGTCAGTCTGGGACTCTCCAGAAGATACAATGGCTATGTCCTCAGAGTGTAGTGGACAATCAGTACAGGAAGATAAGGGACTTAGCAGCCAATCTCTGTAAGTAATATTTGCGATGTCATTCAAGGAATATAATTTCCTCATGTTTAAGAATGttttgaatatatttttttttcagcaCAGGATTGTGCTTGGACAGGGCACTGGTGTCTCCAGGCCGTGTATCTAGACTAGAGGAACCCTTCTACCATGCCAACATAGTATCAAAGCACTGGATTGTGAATCACTGAAGGAATGAAGTATCGCTAGTTTAAAAATAAGCTTCTTTATGGAGCTGTTTGTATTTGTGTGGTTAATTCCATAAAACCATACCTGCAcatgtcaatgttcatatttaCAAAATCATACAGAAACAAATTATATTACAACATGAACAAAATAACCTTCCTTCAGCAGTTATTACAGCAATTTGGTTTTACACCTTAAAGACTTGTGCAGAGACAAATGACAGGAAATAAGTACTTAGAACACATGTGGACATCACATACAGTAGATGCCAGCTGGACAATTCCTTCCCCACAATTGTATGGTTTCACTCGGGAAAGCAATCTATTCATGAATGGCATATGTTCCATGGACACTGCTGAACTTAAATGTGTAGAAAAAGGGGAGTTATGCCTTCCAAACAAATAGCCATCCAAGAGCAATGCAGTTGACCGACTTTAATAGAAAAACTTTAAATAGCTCAGCTTTCTGTACATAGGCCTACTATTGGCACCCTCCTTCGACAGAGACTTGTAAGTAtatctgtgtgtgagtgactgagtACAGTTTTGTGCTTGGTTTCATCCCAGCAGAAGGCCTGACAGTGCATTCAGGTCCCTCATGTAGGGGTTGTCACTGAGGATACGGTCAATGCGCTGCTTCTGGTCGGGGAAGATATCGTACAGCTTCCTTTTGAGCTCTATGGTTTCCGAGGGTGACcgctggggagggggagagggtgttGGGCGAGGGGTGTTTGATCGCTgaagagggggtgaggggtgaggagggtgtGACCTCTGTGGAGGTGGTGAGGGTGTTGGGTGAGGGGGGTGCCACCCAGGGGGCCCAGAATGTGGCCAGTGGGAGAGTGGCCTCATCTGGGGGGTAGCTGTGGGGCGAGGGACAAATGAGGGGCGAGGTGCAGACTGCAGAGCTTGGACAAAGA

Function

NR:

description
NEDD4-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31456 True 2095 lncRNA 0.43 1 27132927 27135021

Neighbor

gene id symbol gene type direction distance location
LOC110520062 NA coding downstream 193603 26926298 ~ 26939324 (-)
LOC110520038 LOC106573702 coding downstream 631436 25895216 ~ 26501491 (-)
LOC118966628 NA coding downstream 1385708 25732955 ~ 25747219 (-)
LOC110520015 LOC106573699 coding downstream 1420489 25679909 ~ 25712438 (-)
LOC110520008 kcng4 coding downstream 1566334 25537115 ~ 25566593 (-)
LOC118966748 NA coding upstream 8339 27143360 ~ 27143413 (-)
LOC110520098 LOC106573710 coding upstream 70890 27205911 ~ 27215251 (-)
LOC110532124 LOC104966864 coding upstream 91142 27226163 ~ 27299859 (-)
LOC110532131 aars coding upstream 181651 27316672 ~ 27321126 (-)
LOC110520123 LOC106573712 coding upstream 197527 27332548 ~ 27342006 (-)
G27478 NA non-coding downstream 998 27131682 ~ 27131929 (-)
G27462 NA non-coding downstream 12008 27120706 ~ 27120919 (-)
G27414 NA non-coding downstream 52865 27079861 ~ 27080062 (-)
G27297 NA non-coding downstream 156713 26975979 ~ 26976214 (-)
G27294 NA non-coding downstream 158982 26973746 ~ 26973945 (-)
G27481 NA non-coding upstream 2079 27137100 ~ 27137330 (-)
G27969 NA non-coding upstream 88466 27223487 ~ 27232530 (-)
G28024 NA non-coding upstream 216284 27351305 ~ 27351655 (-)
G28033 NA non-coding upstream 268833 27403854 ~ 27404723 (-)
G25117 zfpm1 other downstream 1850909 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 1851897 25280592 ~ 25281030 (-)
LOC110518671 klhl36 other downstream 2181540 24944908 ~ 24972465 (-)
LOC118956210 NA other downstream 2194226 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 2268093 24853824 ~ 24865158 (-)
LOC110520292 gnao1 other upstream 501067 27631001 ~ 27781768 (-)
G28870 NA other upstream 922422 28057443 ~ 28066305 (-)
G29355 NA other upstream 1568866 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 2145255 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 3996872 31131151 ~ 31132900 (-)

Expression


Co-expression Network