G27553


Basic Information

Item Value
gene id G27553
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27257563 ~ 27316517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU31561
ggtcgcaaagttcaagggggccgaatactttcgcaaggcactgactgtatttacagcCATGTGACAACACACACGTCCATGCTTGCGTGCCTTTTCCCATTGTTGGACATACAGTACCTTTCCTGTAGTGCACCATAAACCTCAGCTACAGTACAGTGCTATCTTAAGTGTTGGTAGTCATGCACATTCACACACCTACTATAAATACCTGCATGTGCTATTCAAATCTTACTGTTTGTTAGTCATGTCTCTTACACATGCACATTCTGAGGGATTCAAATGGCTTCTTTTCCCTGATTTAGACCACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACTCCCTGGTCTCGGCTTGGCTGAGAGctggacccacacacacacaccgtacATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTctggacccacacacacaccgtacattatACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTctggacccacacacacaccgtacattATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTCTGGACCCACACACATACGTTTCACTCTGCCTTTCTCTAGGAGCCACGTAGAAAGGCTTTCTTTATGTTACTTTTTATACAGAACACATTACCTTGACATGAACTCTATCTGTGACGACTAGTTTTGGGTGATATGACAATGGCTGAATGAATTTGCTGTGCTCAATCTGTGTTTTGCCGTTGTCGGTGAGCTAACGTGTTCCAAGATGACAGCCAATGGCGATGTATCTAGTGCTTAAAACACAACTCCACCCTGTTTCACATGGAAAGTCTAAATATTCCCACCACTTTTCTGGGTGGTGCTGTCCGTGCCAGAAATAGAATGTACAATACTTCACCAAAGAGTATCAAACATAATTAACATTGTTCTAATGACTTCTATATCTTTCATTCCATTACTTCCTATCACTTTTCTAACTCTATAAATGTTTATTCAACAGTATATAAGGCCCATATGTAATGTATCAATAAAGCTAGCCCACTAATGCTTAACGCCACATCCTAGCTCAACTTGCATCATTTTGTTTTCACATAGTAAGGACACAGTATTTCCCCTATTATGTTGTTCAATTGCAGTGTACCTTCTGGGGAAATTGACTGTGTGAAAGGTGAGATCCCTTTCCACTCTGCTGTCCCCGAGTGTATCGTTGGATAATGGAtcgttttttaatgtattttgagTTTATTGGTTCTGGTTTGTAGCGTTACCTACATGGTTTCTtaagacacatactgtatctattCTGTTGCATTGTTTTGGTGGTCTGCATCTCCAGCTCTTCATTAGAGTTCTCTTGTGCACAACAACAGGATTCACCGACAACAGTGTACATAGTGTTACTATCGTATTACTACTATTACCAATAGTATCCTCATTGGTGTTATGACTATCATTGGGTCAGTCAGTACTCCATCTCTATTTTAAAACTCGATCTATATGATGGACTGTTTTTATCATATGCTattgtaaaataaaaacaaaat
>TU31559
gcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatgcttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaaATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTctggacccacacacacaccgtacattATACACACCCCCTGGTCTCGGCTTGGCTGAGAGctggacccacacacacaccgtacattATACACACCCCCTGGTCTCGGCTTGGCTGAGAGctggacccacacacacaccgtacattATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTctggacccacacacacacgtacattatACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTctggacccacacacacaccgtacattATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTCTGGACCCACACACATACGTTTCACTCTGCCTTTCTCTAGGAGCCACGTAGAAAGGCTTTCTTTATGTTACTTTTTATACAGAACACATTACCTTGACATGAACTCTATCTGTGACGACTAGTTTTGGGTGATATGACAATGGCTGAATGAATTTGCTGTGCTCAATCTGTGTTTTGCCGTTGTCGGTGAGCTAACGTGTTCCAAGATGACAGCCAATGGCGATGTATCTAGTGCTTAAAACACAACTCCACCCTGTTTCACATGGAAAGTCTAAATATTCCCACCACTTTTCTGGGTGGTGCTGTCCGTGCCAGAAATAGAATGTACAATACTTCACCAAAGAGTATCAAACATAATTAACATTGTTCTAATGACTTCTATATCTTTCATTCCATTACTTCCTATCACTTTTCTAACTCTATAAATGTTTATTCAACAGTATATAAGGCCCATATGTAATGTATCAATAAAGCTAGCCCACTAATGCTTAACGCCACATCCTAGCTCAACTTGCATCATTTTGTTTTCACATAGTAAGGACACAGTATTTCCCCTATTATGTTGTTCAATTGCAGTGTACCTTCTGGGGAAATTGACTGTGTGAAAGGTGAGATCCCTTTCCACTCTGCTGTCCCCGAGTGTATCGTTGGATAATGGAtcgttttttaatgtattttgagTTTATTGGTTCTGGTTTGTAGCGTTACCTACATGGTTTCTtaagacacatactgtatctattCTGTTGCATTGTTTTGGTGGTCTGCATCTCCAGCTCTTCATTAGAGTTCTCTTGTGCACAACAACAGGATTCACCGACAACAGTGTACATAGTGTTACTATCGTATTACTACTATTACCAATAGTATCCTCATTGGTGTTATGACTATCATTGGGTCAGTCAGTACTCCATCTCTATTTTAAAACTCGATCTATATGATGGACTGTTTTTATCATATGCTattgtaaaataaaaacaaaat
>TU31562
ggggccgaatactttcgcaaggcactgtatttacagcCATGTGACAACACACACGTCCATGCTTGCGTGCCTTTTCCCATTGTTGGACATACAGTACCTTTCCTGTAGTGCACCATAAACCTCAGCTACAGTACAGTGCTATCTTAAGTGTTGGTAGTCATGCACATTCACACACCTACTATAAATACCTGCATGTGCTATTCAAATCTTACTGTTTGTTAGTCATGTCTCTTACACATGCACATTCTGAGGGATTCAAATGGCTTCTTTTCCCTGATTTAGACCACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTctggacccacacacacaccgtacattatACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTctggacccacacacacaccgtacattATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGGACCCACACACATTACCGTACATTATACACACCCCCTGGTCTCGGCTTGGCTGAGAGCTGTGCCTTCTGGACCCACACACATACGTTTCACTCTGCCTTTCTCTAGGAGCCACGTAGAAAGGCTTTCTTTATGTTACTTTTTATACAGAACACATTACCTTGACATGAACTCTATCTGTGACGACTAGTTTTGGGTGATATGACAATGGCTGAATGAATTTGCTGTGCTCAATCTGTGTTTTGCCGTTGTCGGTGAGCTAACGTGTTCCAAGATGACAGCCAATGGCGATGTATCTAGTGCTTAAAACACAACTCCACCCTGTTTCACATGGAAAGTCTAAATATTCCCACCACTTTTCTGGGTGGTGCTGTCCGTGCCAGAAATAGAATGTACAATACTTCACCAAAGAGTATCAAACATAATTAACATTGTTCTAATGACTTCTATATCTTTCATTCCATTACTTCCTATCACTTTTCTAACTCTATAAATGTTTATTCAACAGTATATAAGGCCCATATGTAATGTATCAATAAAGCTAGCCCACTAATGCTTAACGCCACATCCTAGCTCAACTTGCATCATTTTGTTTTCACATAGTAAGGACACAGTATTTCCCCTATTATGTTGTTCAATTGCAGTGTACCTTCTGGGGAAATTGACTGTGTGAAAGGTGAGATCCCTTTCCACTCTGCTGTCCCCGAGTGTATCGTTGGATAATGGAtcgttttttaatgtattttgagTTTATTGGTTCTGGTTTGTAGCGTTACCTACATGGTTTCTtaagacacatactgtatctattCTGTTGCATTGTTTTGGTGGTCTGCATCTCCAGCTCTTCATTAGAGTTCTCTTGTGCACAACAACAGGATTCACCGACAACAGTGTACATAGTGTTACTATCGTATTACTACTATTACCAATAGTATCCTCATTGGTGTTATGACTATCATTGGGTCAGTCAGTACTCCATCTCTATTTTAAAACTCGATCTATATGATGGACTGTTTTTATCATATGCTattgtaaaataaaaacaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31561 False 1845 lncRNA 0.44 4 27257563 27316517
TU31559 False 1740 TUCP 0.44 2 27313822 27316517
TU31562 True 1764 lncRNA 0.44 3 27314448 27316517
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110520078 LOC106573709 coding upstream 86220 27152820 ~ 27171343 (+)
n4bp1 LOC106573708 coding upstream 122543 27122394 ~ 27135020 (+)
LOC110520069 LOC106573707 coding upstream 306471 26944223 ~ 26951092 (+)
LOC110532115 NA coding upstream 357007 26869790 ~ 26900556 (+)
LOC110520060 LOC106573705 coding upstream 392268 26705640 ~ 26865295 (+)
LOC110520128 pllp coding downstream 45330 27361847 ~ 27371718 (+)
LOC110520156 fam192a coding downstream 76007 27392524 ~ 27404745 (+)
LOC110520245 bbs2 coding downstream 236866 27553383 ~ 27559787 (+)
LOC110520258 LOC106560847 coding downstream 243585 27560102 ~ 27565152 (+)
LOC110532139 LOC106573731 coding downstream 499962 27816479 ~ 27830578 (+)
G27534 sf3b3 non-coding upstream 21412 27229326 ~ 27236151 (+)
G27485 NA non-coding upstream 114888 27141275 ~ 27142675 (+)
G27469 NA non-coding upstream 125696 27131658 ~ 27131867 (+)
G27467 NA non-coding upstream 130135 27127033 ~ 27127428 (+)
G27597 NA non-coding downstream 6746 27323263 ~ 27328250 (+)
G27604 NA non-coding downstream 25157 27341674 ~ 27342123 (+)
G27649 NA non-coding downstream 125267 27441784 ~ 27445410 (+)
G27653 NA non-coding downstream 172073 27488590 ~ 27493843 (+)
G27655 herpud1 non-coding downstream 179915 27496432 ~ 27498018 (+)
si:ch211-216l23.2 LOC106573703 other upstream 570765 26680211 ~ 26696018 (+)
G26858 NA other upstream 601965 26655297 ~ 26655598 (+)
LOC110520022 LOC106573700 other upstream 1525364 25712423 ~ 25732202 (+)
LOC110519986 LOC106573695 other upstream 1801446 25448856 ~ 25458271 (+)
G24365 kiaa0513 other upstream 2089235 25167817 ~ 25168328 (+)
G28280 NA other downstream 528123 27844640 ~ 27845011 (+)
G28285 LOC106573733 other downstream 537240 27853757 ~ 27854954 (+)
G28416 carmil2 other downstream 731109 28047626 ~ 28048362 (+)
LOC110520661 LOC106573762 other downstream 1749139 28903691 ~ 29067795 (+)
LOC110520111 LOC106573711 coding upstream 5107 27271900 ~ 27308715 (+)
G27536 NA non-coding upstream 19115 27235037 ~ 27294707 (+)

Expression

G27553 Expression in all Baseline Samples

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G27553 Expression in each Bioproject

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G27553 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network