G27722


Basic Information

Item Value
gene id G27722
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27551335 ~ 27552162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU31768
TAAGTTACATGCAATTTATTTCCTTACATTTGACAAGGTACAAAAGCTATGCTCAAGATGGTACAACTTCATAGTCATAGGGAATGGACTGCATTGTGATGTCATACACAGGCCTCACTGACAACAGCTGGTATCACAAGTCTTGCCCTTGCACACGCAGCCTGAGGCACACTTGCTGCAGCCGGAGGGACAGCAGTCGCAGCAACCTGATGGGCCGAAAAATAATCGATTAGTGATGACCAAAGACTATTTCGTTGCCACCTAATGAGGCAATTGAGGTTAATTAGGCTAACCATGGGGCTTTAAAGTGCCACCAGCGATAAGAAAAAGACTATTGGCCTAATAACACTAGTTGGATTTAGAATAGAACCACTTACTTGCTTTCTTACAACTGGTGCATGCGCAGTTGGAGCACTTGCAGGATCCACCGCAGTTGCAAGATCCAGCTTTTGGAGCATTCACAAGGATCCATTTTCCAGTTTTTGAGCTACCTTCTTTATCCGAATGGATCGTAGTAGTTTGTCTGGGTGTCAGTGGTGTGTTGTCAGCTTTTAATTTCTAACTAGCGAGACTTCGAATTTATATCGTCC
>TU31769
TAAGTTACATGCAATTTATTTCCTTACATTTGACAAGGTACAAAAGCTATGCTCAAGATGGTACAACTTCATAGTCATAGGGAATGGACTGCATTGTGATGTCATACACAGGCCTCACTGACAACAGCTGGTATCACAAGTCTTGCCCTTGCACACGCAGCCTGAGGCACACTTGCTGCAGCCGGAGGGACAGCAGTCGCAGCAACCTGATGGGCCGAAAAATAATCGATTAGTGATGACCAAAGACTATTTCGTTGCCACCTAATGAGGCAATTGAGGTTAATTAGGCTAACCATGGGGCTTTAAAGTGCCACCAGCGATAAGAAAAAGACTATTGGCCTAATAACACTAGTTGGATTTAGAATAGAACCACTTACTTGCTTTCTTACAACTGGTGCATGCGCAGTTGGAGCACTTGCAGGATCCACCGCAGTTGCAAGATCCAGTTTGGAGCATTCACAAGGATCCATTTTCCAGTTTTTGAGCTACCTTCTTTATCCGAATGGATCGTAGTAGTTTGTCTGGGTGTCAGTGGTGTGTTGTCAGCTTTTAATTTCTAACTAGCGAGACTTCGAATTTATATCGTCC
>TU31770
TAAGTTACATGCAATTTATTTCCTTACATTTGACAAGGTACAAAAGCTATGCTCAAGATGGTACAACTTCATAGTCATAGGGAATGGACTGCATTGTGATGTCATACACAGGCCTCACTGACAACAGCTGGTATCACAAGTCTTGCCCTTGCACACGCAGCCTGAGGCACACTTGCTGCAGCCGGAGGGACAGCAGTCGCAGCAACCTGATGGGCTTGCTTTCTTACAACTGGTGCATGCGCAGTTGGAGCACTTGCAGGATCCACCGCAGTTGCAAGATCCAGCTATAAATAAACAGTTGAGTTAGGTAATTGGTAATTAGCCTGTTAAGATTTTAGAAATACGCTTAAGGCGTATCCATAGCCTATAGTCTTGATAAATTGATCGATATACATAACTTACTTTTGGAGCATTCACAAGGATCCATTTTCCAGTTTTTGAGCTACCTTCTTTATCCGAATGGATCGTAGTAGTTTGTCTGGGTGTCAGTGGTGTGTTGTCAGCTTTTAATTTCTAACTAGCGAGACTTCGAATTTATATCGTCC
>TU31771
TAAGTTACATGCAATTTATTTCCTTACATTTGACAAGGTACAAAAGCTATGCTCAAGATGGTACAACTTCATAGTCATAGGGAATGGACTGCATTGTGATGTCATACACAGGCCTCACTGACAACAGCTGGTATCACAAGTCTTGCCCTTGCACACGCAGCCTGAGGCACACTTGCTGCAGCCGGAGGGACAGCAGTCGCAGCAACTTGCTTTCTTACAACTGGTGCATGCGCAGTTGGAGCACTTGCAGGATCCACCGCAGTTGCAAGATCCAGTTTTGGAGCATTCACAAGGATCCATTTTCCAGTTTTTGAGCTACCTTCTTTATCCGAATGGATCGTAGTAGTTTGTCTGGGTGTCAGTGGTGTGTTGTCAGCTTTTAATTTCTAACTAGCGAGACTTCGAATTTATATCGTCC
>TU31772
TAAGTTACATGCAATTTATTTCCTTACATTTGACAAGGTACAAAAGCTATGCTCAAGATGGTACAACTTCATAGTCATAGGGAATGGACTGCATTGTGATGTCATACACAGGCCTCACTGACAACAGCTGGTATCACAAGTCTTGCCCTTGCACACGCAGCCTGAGGCACACTTGCTTTCTTACAACTGGTGCATGCGCAGTTGGAGCACTTGCAGGATCCACCGCAGTTGCAAGATCCAGCTATAAATAAACAGTTGAGTTAGGTAATTGGTAATTAGCCTGTTAAGATTTTAGAAATACGCTTAAGGCGTATCCATAGCCTATAGTCTTGATAAATTGATCGATATACATAACTTACTTTTGGAGCATTCACAAGGATCCATTTTCCAGTTTTTGAGCTACCTTCTTTATCCGAATGGATCGTAGTAGTTTGTCTGGGTGTCAGTGGTGTGTTGTCAGCTTTTAATTTCTAACTAGCGAGACTTCGAATTTATATCGTCC
>TU31774
TAAGTTACATGCAATTTATTTCCTTACATTTGACAAGGTACAAAAGCTATGCTCAAGATGGTACAACTTCATAGTCATAGGGAATGGACTGCATTGTGATGTCATACACAGGCCTCACTGACAACAGCTGGTATCACAAGTCTTGCCCTTGCACACGCAGCCTGAGGCACACTTGCTGCAGCCGGAGGGACAGCAGTCGCAGCAACCTGTTTCTTACAACTGGTGCATGCGCAGTTGGAGCACTTGCAGGATCCACCGCAGTTGCAAGATCCAGTTTGGAGCATTCACAAGGATCCATTTTCCAGTTTTTGAGCTACCTTCTTTATCCGAATGGATCGTAGTAGTTTGTCTGGGTGTCAGTGGTGTGTTGTCAGCTTTTAATTTCTAACTAGCGAGACTTCGAATTTATATCGTCCGGGGCAGACAGGTGCCGTGTGCAGAACAGAGTCGCGCGTTCACGCAGACAGCTCATTAATAGGCTTGCTTGCACACGGTTTATTATCTAGAGCGAAAACATGCCCATCAAGGGAATAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31768 False 590 lncRNA 0.44 2 27551335 27552041
TU31769 False 588 lncRNA 0.44 2 27551335 27552041
TU31770 False 545 lncRNA 0.43 2 27551335 27552041
TU31771 False 418 lncRNA 0.45 3 27551335 27552041
TU31772 False 502 lncRNA 0.41 2 27551335 27552041
TU31774 True 537 lncRNA 0.47 3 27551335 27552162

Neighbor

gene id symbol gene type direction distance location
LOC110520156 fam192a coding upstream 146590 27392524 ~ 27404745 (+)
LOC110520128 pllp coding upstream 179617 27361847 ~ 27371718 (+)
LOC110520111 LOC106573711 coding upstream 242620 27271900 ~ 27308715 (+)
LOC110520078 LOC106573709 coding upstream 379992 27152820 ~ 27171343 (+)
n4bp1 LOC106573708 coding upstream 416315 27122394 ~ 27135020 (+)
LOC110520245 bbs2 coding downstream 1221 27553383 ~ 27559787 (+)
LOC110520258 LOC106560847 coding downstream 7940 27560102 ~ 27565152 (+)
LOC110532139 LOC106573731 coding downstream 264317 27816479 ~ 27830578 (+)
LOC110520308 nudt21 coding downstream 282636 27834798 ~ 27840257 (+)
LOC110520354 LOC106573739 coding downstream 481545 28033707 ~ 28037291 (+)
G27697 NA non-coding upstream 44995 27505274 ~ 27506340 (+)
G27655 herpud1 non-coding upstream 53317 27496432 ~ 27498018 (+)
G27653 NA non-coding upstream 57492 27488590 ~ 27493843 (+)
G27649 NA non-coding upstream 105925 27441784 ~ 27445410 (+)
G27604 NA non-coding upstream 209212 27341674 ~ 27342123 (+)
G27791 NA non-coding downstream 123523 27675685 ~ 27759169 (+)
G27880 NA non-coding downstream 240443 27792605 ~ 27838346 (+)
G28284 LOC106573733 non-coding downstream 298422 27850584 ~ 27852871 (+)
G28286 NA non-coding downstream 303049 27855211 ~ 27855455 (+)
G28287 NA non-coding downstream 306159 27858321 ~ 27858761 (+)
G27553 NA other upstream 234818 27257563 ~ 27316517 (+)
si:ch211-216l23.2 LOC106573703 other upstream 864537 26680211 ~ 26696018 (+)
G26858 NA other upstream 895737 26655297 ~ 26655598 (+)
LOC110520022 LOC106573700 other upstream 1819136 25712423 ~ 25732202 (+)
LOC110519986 LOC106573695 other upstream 2095218 25448856 ~ 25458271 (+)
G28280 NA other downstream 292478 27844640 ~ 27845011 (+)
G28285 LOC106573733 other downstream 301595 27853757 ~ 27854954 (+)
G28416 carmil2 other downstream 495464 28047626 ~ 28048362 (+)
LOC110520661 LOC106573762 other downstream 1513494 28903691 ~ 29067795 (+)

Expression


Co-expression Network