G27791


Basic Information

Item Value
gene id G27791
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27675685 ~ 27759169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU31849
CCACTGCTGTCTCCAACAACATCAGCCCGGCCCGCTCCTCCCCACTTCTCTCTGCTCAGTTTTCATTtcagctcctctctgtctcagaGACTTCATAGACTTCACACAAGCTGCCACCTTCACCCCTCTGAAACACACCTCAGTGAGACTCCGGCCTTTTAGGTGTCAATCTTTCTCACCATTCTGCACAGGCAATAGGCTATGTGGTTAATATTACACCTACTAGTAGGCAGGTAGCTACATGGCTTCAGTAGGGTTGCTGGATGCACCATGAACATTACCAGAGGATCTCAGCTATCTCACTCCTCACTCTCTGTCTAGGCGCATGGCCAGAGTAGGTACAGCATGCAGGAAAAACACAACATCCTTTCTGTTGCACCCCCATACGGAGCTATCTCCAACCCTTAACCCCACCCATCTCAGGTGTCCCAGATAAATTTGAAGGGGGAAATCAAATTAAGCCTGCGAATAACAAACAACATGGGCGTTGGCTCATTGCTATGGCAGGCTGGCCAGTAATTAGACAGGCCTGTGTACCCAGCCAGGTGGAAATGACGTGCCCACAGGTGGGGGTGGAGTTGGCCCACAGTGGCGCCCGCCTGGCAGGACCCCCGGGACACCACACAGGGAGGGGTAATTAGACAGAGTGCAACAGGATCCATATCTTCTCCTGTCTTAACGTTACTGCTTTGTCATCATCCTGACCTATAACTTTTCATTTCATACtcaggttgtagtagtagtggtggtccATTAGTAAAGAATGGGTGAGAGACGAGTGCAACAATGGAGAAGGGATGTgcagccatattct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31849 True 814 lncRNA 0.50 2 27675685 27759169

Neighbor

gene id symbol gene type direction distance location
LOC110520258 LOC106560847 coding upstream 111379 27560102 ~ 27565152 (+)
LOC110520245 bbs2 coding upstream 115898 27553383 ~ 27559787 (+)
LOC110520156 fam192a coding upstream 270940 27392524 ~ 27404745 (+)
LOC110520128 pllp coding upstream 303967 27361847 ~ 27371718 (+)
LOC110520111 LOC106573711 coding upstream 366970 27271900 ~ 27308715 (+)
LOC110532139 LOC106573731 coding downstream 57310 27816479 ~ 27830578 (+)
LOC110520308 nudt21 coding downstream 75629 27834798 ~ 27840257 (+)
LOC110520354 LOC106573739 coding downstream 274538 28033707 ~ 28037291 (+)
pard6a pard6a coding downstream 483401 28242570 ~ 28288088 (+)
tsnaxip1 tsnaxip1 coding downstream 572799 28331968 ~ 28338395 (+)
G27722 NA non-coding upstream 123523 27551335 ~ 27552162 (+)
G27697 NA non-coding upstream 169345 27505274 ~ 27506340 (+)
G27655 herpud1 non-coding upstream 177667 27496432 ~ 27498018 (+)
G27653 NA non-coding upstream 181842 27488590 ~ 27493843 (+)
G27649 NA non-coding upstream 230275 27441784 ~ 27445410 (+)
G27880 NA non-coding downstream 33436 27792605 ~ 27838346 (+)
G28284 LOC106573733 non-coding downstream 91415 27850584 ~ 27852871 (+)
G28286 NA non-coding downstream 96042 27855211 ~ 27855455 (+)
G28287 NA non-coding downstream 99152 27858321 ~ 27858761 (+)
G28289 NA non-coding downstream 103319 27862488 ~ 27863211 (+)
G27553 NA other upstream 359168 27257563 ~ 27316517 (+)
si:ch211-216l23.2 LOC106573703 other upstream 988887 26680211 ~ 26696018 (+)
G26858 NA other upstream 1020087 26655297 ~ 26655598 (+)
LOC110520022 LOC106573700 other upstream 1943486 25712423 ~ 25732202 (+)
G28280 NA other downstream 85471 27844640 ~ 27845011 (+)
G28285 LOC106573733 other downstream 94588 27853757 ~ 27854954 (+)
G28416 carmil2 other downstream 288457 28047626 ~ 28048362 (+)
LOC110520661 LOC106573762 other downstream 1306487 28903691 ~ 29067795 (+)
mef2aa mef2a other downstream 1433560 29188958 ~ 29316547 (+)

Expression


Co-expression Network