G28280


Basic Information

Item Value
gene id G28280
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27844640 ~ 27845011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU32393
cggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaataatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcaggg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32393 True 372 TUCP 0.46 1 27844640 27845011

Neighbor

gene id symbol gene type direction distance location
LOC110520308 nudt21 coding upstream 4383 27834798 ~ 27840257 (+)
LOC110532139 LOC106573731 coding upstream 14062 27816479 ~ 27830578 (+)
LOC110520258 LOC106560847 coding upstream 280334 27560102 ~ 27565152 (+)
LOC110520245 bbs2 coding upstream 284853 27553383 ~ 27559787 (+)
LOC110520156 fam192a coding upstream 439895 27392524 ~ 27404745 (+)
LOC110520354 LOC106573739 coding downstream 188696 28033707 ~ 28037291 (+)
pard6a pard6a coding downstream 397559 28242570 ~ 28288088 (+)
tsnaxip1 tsnaxip1 coding downstream 486957 28331968 ~ 28338395 (+)
nutf2 nutf2 coding downstream 493289 28338300 ~ 28346361 (+)
LOC110520482 edc4 coding downstream 501530 28346541 ~ 28385332 (+)
G27880 NA non-coding upstream 6294 27792605 ~ 27838346 (+)
G27791 NA non-coding upstream 85471 27675685 ~ 27759169 (+)
G27722 NA non-coding upstream 292478 27551335 ~ 27552162 (+)
G27697 NA non-coding upstream 338300 27505274 ~ 27506340 (+)
G27655 herpud1 non-coding upstream 346622 27496432 ~ 27498018 (+)
G28284 LOC106573733 non-coding downstream 5573 27850584 ~ 27852871 (+)
G28286 NA non-coding downstream 10200 27855211 ~ 27855455 (+)
G28287 NA non-coding downstream 13310 27858321 ~ 27858761 (+)
G28289 NA non-coding downstream 17477 27862488 ~ 27863211 (+)
G28296 NA non-coding downstream 29021 27874032 ~ 27874253 (+)
G27553 NA other upstream 528123 27257563 ~ 27316517 (+)
si:ch211-216l23.2 LOC106573703 other upstream 1157842 26680211 ~ 26696018 (+)
G26858 NA other upstream 1189042 26655297 ~ 26655598 (+)
LOC110520022 LOC106573700 other upstream 2112441 25712423 ~ 25732202 (+)
G28285 LOC106573733 other downstream 8746 27853757 ~ 27854954 (+)
G28416 carmil2 other downstream 202615 28047626 ~ 28048362 (+)
LOC110520661 LOC106573762 other downstream 1220645 28903691 ~ 29067795 (+)
mef2aa mef2a other downstream 1347718 29188958 ~ 29316547 (+)
G33249 NA other downstream 4005462 31850473 ~ 31850969 (+)

Expression


Co-expression Network