G28473


Basic Information

Item Value
gene id G28473
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28152725 ~ 28153789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU32616
AGCAGCGATGTATACTTCTcccgctggtcatctgatagggaacagactagtagtgtcggaaggtgggtgagattgttgtcatctgatagggaacagactagtagtgtcggaaggtgggtgagattgttgtcatctgatagggaacagactagtagtgttggaaggtgggtgagattgttgtcatctgatagggaacagactagtagtgtcggaaggtgggtgagattgttgtcatctgatagggaacagactagtagtgtcggaaggtgggtgagattgttgtcatctgatagggaacagactagtagtgtcggaaggtgggtgagattgttggcgGGTCAGGAGTCATTTTCCCTTGAAAGCTTTGTCAAGGCTGTACACTGAATTGCAAAAAGgcccttcccttgtagtttggaattcagaTCACTCATGACGGCCATGACGGTGAAGGCAAAAACAGTCAaccattctttatcttgcagttgagagaaatccacatattttcctttcCTTTGCAAAAACTCACTAATCTCAGATATCAGGTCCCACCTTTTAAGCTCCTTCCCGAAACACAGCCATCTCACgtttgtgtggtaggggagatctgcatgacccTACTCGGTATCCTtcaacagtgagacaaactgcctgtggtttaaggattttgctcttatgaagtttaccactgtagtgactgtatccacaacatggctcatttttagaacacatttacagagcacctcctgatgaataatgcaatACAGGAAAATAATTatctgatctgggttcagctcagctaCTTGATCTTGTATCCTTTTCAAAAGGCCAAAGTCTTTTCCTGTCAAGTTTGGGCACCCATCAGTGGTCACACTGGATAACTTTTCATTAACCTCCTCCAATAAATCTTTCCCTGTGGTTGTGCTCTTCAATGACTGCACTGAAGCAAGCTCCTCTGTAATTTCC

Function

NR:

description
General transcription factor II-I repeat domain-containing protein 2B, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32616 True 963 lncRNA 0.44 2 28152725 28153789
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110520354 LOC106573739 coding upstream 115434 28033707 ~ 28037291 (+)
LOC110520308 nudt21 coding upstream 312468 27834798 ~ 27840257 (+)
LOC110532139 LOC106573731 coding upstream 322147 27816479 ~ 27830578 (+)
LOC110520258 LOC106560847 coding upstream 588419 27560102 ~ 27565152 (+)
LOC110520245 bbs2 coding upstream 592938 27553383 ~ 27559787 (+)
pard6a pard6a coding downstream 88781 28242570 ~ 28288088 (+)
tsnaxip1 tsnaxip1 coding downstream 178179 28331968 ~ 28338395 (+)
nutf2 nutf2 coding downstream 184511 28338300 ~ 28346361 (+)
LOC110520482 edc4 coding downstream 192752 28346541 ~ 28385332 (+)
nrn1la LOC106560823 coding downstream 234179 28387968 ~ 28444370 (+)
G28423 NA non-coding upstream 83788 28063840 ~ 28068937 (+)
G28321 NA non-coding upstream 248240 27903718 ~ 27904485 (+)
G28300 LOC106573733 non-coding upstream 269512 27882584 ~ 27883213 (+)
G28296 NA non-coding upstream 278472 27874032 ~ 27874253 (+)
G28480 NA non-coding downstream 5080 28158869 ~ 28208029 (+)
G28487 NA non-coding downstream 14139 28167928 ~ 28187760 (+)
G28636 NA non-coding downstream 343263 28497052 ~ 28497367 (+)
G28638 NA non-coding downstream 345936 28499725 ~ 28499948 (+)
G28653 NA non-coding downstream 381378 28535167 ~ 28610883 (+)
G28416 carmil2 other upstream 104363 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 297771 27853757 ~ 27854954 (+)
G28280 NA other upstream 307714 27844640 ~ 27845011 (+)
G27553 NA other upstream 836208 27257563 ~ 27316517 (+)
LOC110520661 LOC106573762 other downstream 911867 28903691 ~ 29067795 (+)
mef2aa mef2a other downstream 1038940 29188958 ~ 29316547 (+)
G33249 NA other downstream 3696684 31850473 ~ 31850969 (+)
G33284 NA other downstream 3802741 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 4297065 32450854 ~ 32452385 (+)

Expression

G28473 Expression in all Baseline Samples

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G28473 Expression in each Bioproject

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G28473 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network