G28653


Basic Information

Item Value
gene id G28653
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28535167 ~ 28610883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU32824
ATTTCAGTATTACCATTTTATTGAGTTGCATCACTCTACATTATCTAGAATTTCAACAACGTTAAGACTAAATATAGTACTTGCATCCCTGCAATAAGTCTCTACACTCAAAGAGAGAAAGCCATTTTACTGAAACATACATAAGTATAAGAATTAGTATTTCATTAAACATTGCCATAAAAGTGAATGTTCATTCTGTATGGCATTTTCtattcatatatatttttgtttcatctgtccTTTATAGGAAtactataaaataaaaataagaaatgcACAAAACCCATTGAAAATAGCATGGCTAAATACTACAGCAAATAAGTTACTGGACATTCATTTGAACATGCACTCAAGTGAGGGATAAGGAGAGAAAAAATTGATTGCACAGTTTAGGGAACAGCCAGGAATGTTATAGAAATAGTATtggcattttttttttgtctggcTGGCTCTGACCTGTTCATACAGAACCCAACAGAAGCAACGGATAAATAGAAAACCTTTCCAGTAGAATTTCCCCACGTCTGTCAACAAGGGATCCATGCACTTGCTCCATTCTGTAATACTGATGCTGAGGCTAATATAAAGCCCAAGGCGTGCTATTCATTATTGATTAATATCACAGGTGCATTAACACTGAGAAGTCCAGGGTTCTCTCAAGGTAAAGTGTAATGTGGCCTAGCACCAGAGATTGAACTGGACATGAGTTCATTCCATTTCAGTGGTGGTCCTAGTTATGATCAAAGGCAAGTAAACAAaccgttttatttattttacagtgcACAAGGACAGTATTTGTTATTACTTGATATTATCTGAGAATGTTATCCTGGGGAGGGAGAGTTTGATATTCCCCCATTGGTTAAGGACAGGCTTGCCATGACCTTCATGTGCTTACAGGACAAACTAAGAAATTCAATGGCGAAGTAGGTGAAATATTCCGCCCTCTAAAGGTTGATCAAGATGAGTGATTCATACATTATTCTTTATAGATAACATTCATATTTTGATCATTTCTAATACTCTCATACTTTATATATCTTAATCGCTATATTCCATTTATGTACATTGTGGTTTTTGACTAGGTCTCTGTTTGATCATGTTGATTTCAGGTTGGTGAAATTGGGGTTGGACAAAGTCGTCATGGTCCTAGATGTGCACAAGAGGTTCTTCTCTAACTGGGCTGGTGGGTGAACATTCTGATATATTTTCTGTTACTATCATTTTGCTTGATAGGTGTGTAAACATCTCCTTTTTGCTCAATTGCAATGAACATTGTGATTGTAAGATGGGGCTGTGCGTTAGATGTTTAAAATCTAATTAGTGTGTGTTTTTGGGAAATCCTACCTAGGTACCCACTTACAACCTCAACCATATGCTGATGTTTAAGGCTTGAGATTGTGTTGGTCAAAAAGGGAACTGCTGCAGCAAACCAAGTTTTGCTACTTTTGTAGTAATTGCTTTTTCTTCATAATTTTGCACTGTATCACGAAAGACATCAATAcaaatataattataatataacatTTTTTCATATAATTTTACTAGACTTTAACAGCTAATATATCCAGTGCTGATTCATACATTTACTTTTAACACAACGGAAAAAACAACCTTAACTGCTTGATAGAGACGAATGTTGAGTGCTCTATTAGTCTACCATTAGCAGTAGCAGGTTCATGTCTTTAGTCAAAATGGATGACATGCACGAGAGCCTCAAAAGCAGGTTAACAGTTCACGTCATTTCTACCATGACTTGAGGGTGAACGATATGATGAAGAAATGCATTGGATGGAGGTAATCTCGCTTTAATGCACTGTTCAATATTCACTGCAATTGACACATTCCATTTTGCCTCAATATCAAACAGACACTGTGTAAACATGTACTtacaaaagagagaaagagaggggttgtGAGGGTGAGGGAGagagagcgagagagaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32824 True 1948 lncRNA 0.36 2 28535167 28610883

Neighbor

gene id symbol gene type direction distance location
LOC110532150 LOC106560818 coding upstream 862 28530845 ~ 28534305 (+)
mbtps1 LOC106573750 coding upstream 8965 28500843 ~ 28526202 (+)
pskh1 pskh1 coding upstream 41114 28478880 ~ 28494053 (+)
nrn1la LOC106560823 coding upstream 90797 28387968 ~ 28444370 (+)
LOC110520482 edc4 coding upstream 149835 28346541 ~ 28385332 (+)
pnp6 LOC106573753 coding downstream 127232 28738115 ~ 28742553 (+)
LOC110520547 LOC106573754 coding downstream 138999 28749882 ~ 28763697 (+)
LOC110520559 LOC106573756 coding downstream 159085 28769968 ~ 28778739 (+)
LOC110520570 LOC106573757 coding downstream 171014 28781897 ~ 28786756 (+)
LOC110520650 LOC106573761 coding downstream 231709 28842592 ~ 28844660 (+)
G28638 NA non-coding upstream 35219 28499725 ~ 28499948 (+)
G28636 NA non-coding upstream 37800 28497052 ~ 28497367 (+)
G28480 NA non-coding upstream 327138 28158869 ~ 28208029 (+)
G28487 NA non-coding upstream 347407 28167928 ~ 28187760 (+)
G28473 NA non-coding upstream 381378 28152725 ~ 28153789 (+)
G29227 NA non-coding downstream 66343 28677226 ~ 28677802 (+)
G29229 NA non-coding downstream 69299 28680182 ~ 28680381 (+)
G29236 NA non-coding downstream 80126 28691009 ~ 28691516 (+)
G29239 hydin non-coding downstream 81806 28692689 ~ 28692984 (+)
G29240 NA non-coding downstream 82528 28693411 ~ 28693653 (+)
G28416 carmil2 other upstream 486805 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 680213 27853757 ~ 27854954 (+)
G28280 NA other upstream 690156 27844640 ~ 27845011 (+)
LOC110520258 LOC106560847 other upstream 970015 27560102 ~ 27565152 (+)
G27553 NA other upstream 1218650 27257563 ~ 27316517 (+)
LOC110520661 LOC106573762 other downstream 454773 28903691 ~ 29067795 (+)
mef2aa mef2a other downstream 581846 29188958 ~ 29316547 (+)
G33249 NA other downstream 3239590 31850473 ~ 31850969 (+)
G33284 NA other downstream 3345647 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 3839971 32450854 ~ 32452385 (+)

Expression


Co-expression Network