Gene
RNA
| Item | Value |
|---|---|
| gene id | G29244 |
| gene name | hydin |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 28696727 ~ 28696958 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| hydin | Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 5. Orthologous to human HYDIN (HYDIN axonemal central pair apparatus protein). |
| description |
|---|
| hydrocephalus-inducing protein homolog isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU33458 | True | 232 | lncRNA | 0.57 | 1 | 28696727 | 28696958 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110532150 | LOC106560818 | coding | upstream | 162422 | 28530845 ~ 28534305 (+) |
| mbtps1 | LOC106573750 | coding | upstream | 170525 | 28500843 ~ 28526202 (+) |
| pskh1 | pskh1 | coding | upstream | 202674 | 28478880 ~ 28494053 (+) |
| nrn1la | LOC106560823 | coding | upstream | 252357 | 28387968 ~ 28444370 (+) |
| LOC110520482 | edc4 | coding | upstream | 311395 | 28346541 ~ 28385332 (+) |
| pnp6 | LOC106573753 | coding | downstream | 41157 | 28738115 ~ 28742553 (+) |
| LOC110520547 | LOC106573754 | coding | downstream | 52924 | 28749882 ~ 28763697 (+) |
| LOC110520559 | LOC106573756 | coding | downstream | 73010 | 28769968 ~ 28778739 (+) |
| LOC110520570 | LOC106573757 | coding | downstream | 84939 | 28781897 ~ 28786756 (+) |
| LOC110520650 | LOC106573761 | coding | downstream | 145634 | 28842592 ~ 28844660 (+) |
| G29243 | hydin | non-coding | upstream | 159 | 28696341 ~ 28696568 (+) |
| G29240 | NA | non-coding | upstream | 3074 | 28693411 ~ 28693653 (+) |
| G29239 | hydin | non-coding | upstream | 3743 | 28692689 ~ 28692984 (+) |
| G29236 | NA | non-coding | upstream | 5211 | 28691009 ~ 28691516 (+) |
| G29229 | NA | non-coding | upstream | 16346 | 28680182 ~ 28680381 (+) |
| G29251 | hydin | non-coding | downstream | 5833 | 28702791 ~ 28703344 (+) |
| G29252 | NA | non-coding | downstream | 6867 | 28703825 ~ 28704528 (+) |
| G29253 | NA | non-coding | downstream | 7659 | 28704617 ~ 28704900 (+) |
| G29256 | NA | non-coding | downstream | 14992 | 28711950 ~ 28712216 (+) |
| G29257 | NA | non-coding | downstream | 16425 | 28713383 ~ 28713875 (+) |
| G28416 | carmil2 | other | upstream | 648365 | 28047626 ~ 28048362 (+) |
| G28285 | LOC106573733 | other | upstream | 841773 | 27853757 ~ 27854954 (+) |
| G28280 | NA | other | upstream | 851716 | 27844640 ~ 27845011 (+) |
| LOC110520258 | LOC106560847 | other | upstream | 1131575 | 27560102 ~ 27565152 (+) |
| G27553 | NA | other | upstream | 1380210 | 27257563 ~ 27316517 (+) |
| LOC110520661 | LOC106573762 | other | downstream | 368698 | 28903691 ~ 29067795 (+) |
| mef2aa | mef2a | other | downstream | 495771 | 29188958 ~ 29316547 (+) |
| G33249 | NA | other | downstream | 3153515 | 31850473 ~ 31850969 (+) |
| G33284 | NA | other | downstream | 3259572 | 31956530 ~ 31961547 (+) |
| G33681 | LOC106573476 | other | downstream | 3753896 | 32450854 ~ 32452385 (+) |
