G29380


Basic Information

Item Value
gene id G29380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28765648 ~ 28766980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU33622
TCACATCCTCATTATAACAGTATCAGCCAGAAAACGCAAcataaaaaatctaaatgtaacagGGTAATAATATAAGGATGAAATACCAGATATATACATAGATGAACTAGATGGTAATTTTCCATGAAGAAAACTTGTGGGACTTGCTTTAACTCTTTAAAAGTATTTTTGTGGTAGTGGAAGAAgtttaaaacattttaattaaGCTAATCAGTTAAATATAGTCAAAGCTAAATGTAGTAAAATAATTGGTCTGCTTACTTTGATATACTACTTTATCAACCTTATTACCTTGGATTGTGGGGCAGTTAGAGCACACATTTCATCAGAAATAACTACATCCAGACTAAACTTTTATACACTCTCCTACTTGAATATCACAGTATATGACAACTGTAATAACAGATTACAGAAGATAATGAGGCATTGATGAAGTTTTAAATAAAACATAACTGTATTTTTTCACAACATATTTGGACGACAGCAGGATATTCATTAAATCCTCTCTGGGCTGGAGGAGGATAAATGGGAAGAGGGACCCACCGGCCAGAAAGGGGGAACCCCTTCCTTCAGAGCCCCTCTGCGCCCAGGGGGGGACACAAGTTAACTGAGCATAGCATACATCTGATAATCATTATTTGAAATGCAATTGTAGTTTCGTTTTTTTTACCATGAGCATGTAGACAGTTAAAAATGTATTTCGCTTTCACAACGTATTTTGACTTTTGCTTTTTTACACTAACATGAAGGAAGAACTAATGCGATACCAATGTTTTGGTCAAGATTCATACCTGAGAGATGTCTGAAGTGAAAATGCAGTACACATGGTTGTGTTAGCTGTAGTACGTCTGCAGCACACCTGAATGGAGGCAATGTTGTGGATGAGAAATGAACACTGGATTTTCAGCCTGGTATTCTTTTCTGTGGTAGCAGCTTGTATCAACCGTGCGTACCACCGTGCCCCTCTATCATGAAACAATGTCAAGATGGGCTTGCTTGACCTGGATAGCAGATCCTTGTTGAAGTTGCCACAGACGATGATCGGTTCAGTGCCTTTAAACTATGACAATggaaggagtgtgtgtgcgtactGGTTTTAATGTGTTTATTACTTCTTACCTGTAGAAAATGATAATTTTGGCACTTCAAACAGACTAAGTAAGCAGGGGTATTAATGCTCAGTGAGATCATATGTTGCTGTGGTAACCAGGGAGCTTTCAATAACAAAGTTACATGACAGTGGGAAGTTAGATGAAAGGAAAATACaactcaaaaatatattttagtatttgtttcattagtccactgttgatagtctaatttgttttgcatg

Function

NR:

description
ATP-dependent DNA helicase PIF1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33622 True 1333 lncRNA 0.40 1 28765648 28766980

Neighbor

gene id symbol gene type direction distance location
hydin hydin coding downstream 28340 28663539 ~ 28737308 (-)
necab2 LOC106573751 coding downstream 104195 28535157 ~ 28661453 (-)
ranbp10 LOC106560827 coding downstream 427125 28294448 ~ 28338523 (-)
ripor1 fam65a coding downstream 544819 28106386 ~ 28220829 (-)
ctcf ctcf coding downstream 659631 28098876 ~ 28106017 (-)
LOC110520584 LOC106573758 coding upstream 27186 28794166 ~ 28830947 (-)
LOC110520608 LOC106573759 coding upstream 68298 28835278 ~ 28842650 (-)
LOC110532163 NA coding upstream 96001 28862981 ~ 28882631 (-)
LOC118946030 NA coding upstream 604953 29371933 ~ 29380725 (-)
nr2f2 LOC106573769 coding upstream 895968 29662948 ~ 29672991 (-)
G29381 NA non-coding downstream 105 28764298 ~ 28765543 (-)
G29378 LOC106573754 non-coding downstream 1985 28749977 ~ 28763663 (-)
G29384 NA non-coding downstream 16142 28748312 ~ 28749506 (-)
G29369 NA non-coding downstream 33916 28727410 ~ 28731732 (-)
G29365 NA non-coding downstream 47155 28718242 ~ 28718493 (-)
G29395 NA non-coding upstream 64289 28831269 ~ 28831491 (-)
G29376 NA non-coding upstream 66589 28833569 ~ 28834943 (-)
G29409 NA non-coding upstream 95277 28862257 ~ 28862761 (-)
G29421 NA non-coding upstream 106592 28873572 ~ 28874071 (-)
G29434 NA non-coding upstream 113962 28880942 ~ 28881152 (-)
G29355 NA other downstream 61292 28703887 ~ 28704356 (-)
G28870 NA other downstream 699343 28057443 ~ 28066305 (-)
LOC110520292 gnao1 other downstream 1122528 27631001 ~ 27781768 (-)
G25117 zfpm1 other downstream 3483630 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 3484618 25280592 ~ 25281030 (-)
G29906 mef2a other upstream 513296 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 2364913 31131151 ~ 31132900 (-)
LOC110521048 LOC100194695 other upstream 2659143 31426123 ~ 31444964 (-)
G33386 NA other upstream 3217791 31984771 ~ 31989249 (-)
G35075 LOC106573452 other upstream 4340139 33107119 ~ 33108497 (-)

Expression


Co-expression Network