G29296


Basic Information

Item Value
gene id G29296
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28794173 ~ 28796143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU33514
TTTGCTGTAGTATTTATACAATGCAGTAGAAGGTACAGTAAATGTATGCACTTGCAATAGTGGTACATTTACAAAGCACTTAACCCGTACTATTTTATACAGTACATTGTTTCTTCTTTTATAGTATTTGCATACCTGTATAGCTAAGCAAGGCTAAATGTTTGCACAAAATAGAGTAGTTGGGTTCCTTTCACAGCATAAACAAATTTGGACACTCAATTCAACTATCCATaagtatacaatatacattatcAACAATATTCAGTGTAACGTAGAGGAGCTCCTTCTTACCATGTTTGATAATCAATTACatgtacatttgatttgatcactgtATTGGATGGCAAGACATGAAATACACCAAGGATGTACTCAGAAATTTGAATGTGACACTGTCAATTACATTTGAAAACAGTTGGATCAATTCTTATTTTGTCTCAAACTAATAATATAGCATGAAAGAGAGGTGTAAGGTATATACAAATACATGAGAATGGAATGTAGTTGATCACACAATTCTGTAGGAGGTGTGGAGAAAACAGGAGTGAGACATATTTCATAGGAAAGAGACAACTTCTTATTATGAAAAATACTTATTTCATTTGAAGAAAAAATAGAAAAAGTTTATCTTAAAAAATAAACTGGGTCAGGAAAGTGCCACTAACCTCGTCCCTAGGCTAATTGCATCCAAGCATTGGGAAGAAGTGTCTGGTGAACGAAAAAAAGTGACACTGACATTATATATAACGATGACATTTCAAAGTGAAGGCTCATAACGGTCTCAATAACATTGTAACAAGATTAAATAAACTATTTTACATAAAACAAATATGATGAAATACAGAATACAAATTcatatataaaacatcaataattcTCACAGTTCGGTTATGAATTGGAAAAAAAGTCAAGTAAATATTTCCAGTCCCCAAACATATTCTAAAGATATCATTATAAACATTCAAAACCTCTACATGAGGATTTTTGTCACACCTTGCTAACAGTTCTTCTCACAACTTCATCTACAACTGCTTAACCCAGCTGAATAGCAAGCTTTGCTGCTTGCTATTTCCTTACCAATGTATTATCCAATGTGTTCTTGATGAATATATCTGTTTAAATATCATTACtggttcaatgacatattcaGAGCTGAAACCATTTCTGGGGGCTGTGTAAAGTAAGAGTAAGTACAGAGTAGAGTTGCGAGGTTACCTTCACTAGTGTATTTCAGGTCACATTTTGCACATTATATTCACAGTACTGCAGGTGGAAAAAAAATGCTGTTGGCCAGAGATGCTCCCATCTCATTGGAGGTTCTAGATATTTCCATATACAAGTCATTTTAGAGGAATTTCAGTTGATAAAGAATGGAGGAAAACTGAGCATGGATGCAAAGAACCAAACATAATCAATTGAAACTGAGACACTGAGTCAACATGGCCATACTGGCTTTTCAATTAGCAAGGGTCATTGAGACTTCCTTTCTTTTCCACTATCCCAGTACATTTCCAAACAGCAATAGACTTCCCAGAGATGTAACTCAGACCTCCTTTCAGAATGAAGATTTTTTATCCCGTCTTAATCTGTCTGATATTTTGTTGAAAAGACAAGCCAAGAACCAACTGTGCCCTGTGAGTATGTGTAATATTAGGAGCTTAATATTGTGTAAATACTGAGCAGCAATGCATGGGGCCTAATTTAACACCAAACCAGATATTCATGGTTTCACTTTGGTCCATGCAATAACAACTGTAGTGAGCATTTCATTCCCAAAGCAGGGGGTCACCATTAAGCATGGTCCTACACCCTGTCTGCATTCATTTCAGGTAAAGCGCTATTAATCCATTTATCTTCCACCTCCTTGTTACTATATGTGGTCCCTCACTTAGACACCCAGGCTCCGCTTCTGCTCAAAGTATGCATCAAACCTGGCCATGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33514 True 1943 lncRNA 0.55 2 28794173 28796143

Neighbor

gene id symbol gene type direction distance location
LOC110520570 LOC106573757 coding upstream 7417 28781897 ~ 28786756 (+)
LOC110520559 LOC106573756 coding upstream 15434 28769968 ~ 28778739 (+)
LOC110520547 LOC106573754 coding upstream 30476 28749882 ~ 28763697 (+)
pnp6 LOC106573753 coding upstream 51620 28738115 ~ 28742553 (+)
LOC110532150 LOC106560818 coding upstream 259868 28530845 ~ 28534305 (+)
LOC110520650 LOC106573761 coding downstream 46449 28842592 ~ 28844660 (+)
LOC110520598 LOC106573760 coding downstream 48591 28844734 ~ 28860495 (+)
LOC110520661 LOC106573762 coding downstream 107548 28903691 ~ 29067795 (+)
LOC110520673 LOC106573765 coding downstream 278212 29074355 ~ 29084730 (+)
mef2aa mef2a coding downstream 392815 29188958 ~ 29316547 (+)
G29291 NA non-coding upstream 6701 28787231 ~ 28787472 (+)
G29288 NA non-coding upstream 12858 28780758 ~ 28781315 (+)
G29223 NA non-coding upstream 46515 28743888 ~ 28747658 (+)
G29275 NA non-coding upstream 56438 28737464 ~ 28737735 (+)
G29269 NA non-coding upstream 63946 28728101 ~ 28730227 (+)
G29320 NA non-coding downstream 37418 28833561 ~ 28835039 (+)
G29321 NA non-coding downstream 42550 28838693 ~ 28839112 (+)
G29322 NA non-coding downstream 43410 28839553 ~ 28840172 (+)
G29323 NA non-coding downstream 44465 28840608 ~ 28840825 (+)
G29328 NA non-coding downstream 50111 28846254 ~ 28846459 (+)
G28416 carmil2 other upstream 745811 28047626 ~ 28048362 (+)
G28285 LOC106573733 other upstream 939219 27853757 ~ 27854954 (+)
G28280 NA other upstream 949162 27844640 ~ 27845011 (+)
LOC110520258 LOC106560847 other upstream 1229021 27560102 ~ 27565152 (+)
G27553 NA other upstream 1477656 27257563 ~ 27316517 (+)
G33249 NA other downstream 3054330 31850473 ~ 31850969 (+)
G33284 NA other downstream 3160387 31956530 ~ 31961547 (+)
G33681 LOC106573476 other downstream 3654711 32450854 ~ 32452385 (+)

Expression


Co-expression Network