G29715


Basic Information

Item Value
gene id G29715
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 29065666 ~ 29067792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU33964
CAGCTTCATTCTGTACAGGTGAACATCTGAACAGTACAAAAGTTATAAAAGTGACAAACCATTGATGTGTGTGAAAATGATCCTAAGGTCTAACATACAACTGTAAGACCTTTATATAAATGTTTGAATTGTACAGAGAGACTAATGACAAGTCTAAAAAAGATCTGCTGCGTACAATGCCTCGCATGCTTTTAGCAGACGTATGTATAGTCACAAGGTGGAGTTCTGTTGAGTCCTTTAGTTCTCCTTGTATTAGAACTGATCCAATACCTTCCACTTCAGGTTTGAAACTGTATGTGTTGCATTTTTGGCGCCAAGTCCTTTTCGCTAAATGTCTCTGTTGGTGATGTTGGTGTTTTCATCTCTCAGATGACACATACAATAGAAGAGGAATCCAATAAGGGCTCTGATGTAACTCGGAGGAAAAAAAACAAGAGAAAACAGGCAAATTCCTTTTACAATTTGATTGTAATTGTGAAGTAGAAAACAAAATAAACAGCAATTTGGGTTTTTTAGGATGCTTGATTATGTTTCTCTTCATGTCAAATCAATAGGACAAATGAAGAGCAAGAAGGAGAAAACTACTAACTTTGATTTGACAAAAAATGTGTCCAATTCACAATTGCCCTCCCTCTATGATATCTACCCACTCCTGAAATCCTTCCAGGAATATTTACAGGAAAACCAATTATCCTAGTCCAGAACACATCAATGTCTGAAATGTGGGAGAAGTATACCGATGACCATAGGTTTTTAAGAGGAGCTATATCATGCTGTTGAGAGAATCATGTGTTGGTatataaatacagtgcatttggaatgtGTTCAGACCCCtcgtctttttccacattttgttacgttacagcctgattctaaaatggattttaaaaaatcctcatcaatctacacacaataccccataatgacgaagcaaaaacaggtttagacattttagcaaatctattaaaaatgaaaaaatgtaatgacatttacataagtattcagatcctttactcagtactttgttgaagcaactttggcagcaattacagcctcaattcttcttgggtatgatgctaaaagcttggcacaaatgtatttgaggagtttctcccattcttctctgcagatcctctcaagctctgtcaggttggatggggagcgtcgatgcacaggtattttcaggtctctccagagatgtttggtcaggttcaagtccgggctctggctgggccactcaaggacattcagagacttgttccaacTTGGCTGCGTGCTTAGACTTGTcccgagcaggttttcatcaaggatctctctgtgctttgctccgttcatctttgccttgaccctgactagtctccctgctgctgaaaaacatcccaacagcatgatgctgccatcaccatgcttcaccgcagggatggtaccaggtttcctccagatgtgacccttggcattcaggccaaagagttcaatcttggttcatcagaccacagaatcttgattctcatggtttgagagtcctttgtgtgccttttggcaaactccaggcgagctgtcatgtgccttttactaaggagtggcttccgtctggccactcaaccaaAAATgtctgatggagtgctgcagagatggttgtctcccatctccacagaggaactttggagctctgtcagagtgaccatccggttcttggtcacctcctccgattgctcagtttggccgggcagccagctctaggaagagtcttggtggtgccaaacttcttccatttaagaatgatggaggccactgtgttcttggggaccttcaatgcggcaTAATTATTTTGCTACCCTTCctaagatctgtgcctcgacacaaccctgtcCTGGAACTGTACGGACAATCTCAgggcttggtgtttgctctgacgtgcactgtcaactgtgggaccttatatagacaggtgtgtgcctttccaaatcacgttcaatcaactgaatttaccactcgttgactccaatcaagttgtagaaacatctcaaggatgatcaatggaaacagtatgcATCTCATAACAAAGGGCAGGAATACTTGCTAaatctatttttgctttgtcattatagggtaaaaatatcttagaat

Function

NR:

description
TC1-like transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU33964 True 2127 lncRNA 0.42 1 29065666 29067792

Neighbor

gene id symbol gene type direction distance location
LOC110532163 NA coding downstream 183035 28862981 ~ 28882631 (-)
LOC110520608 LOC106573759 coding downstream 223016 28835278 ~ 28842650 (-)
LOC110520584 LOC106573758 coding downstream 234719 28794166 ~ 28830947 (-)
hydin hydin coding downstream 328358 28663539 ~ 28737308 (-)
necab2 LOC106573751 coding downstream 404213 28535157 ~ 28661453 (-)
LOC118946030 NA coding upstream 304141 29371933 ~ 29380725 (-)
nr2f2 LOC106573769 coding upstream 595156 29662948 ~ 29672991 (-)
LOC118964375 NA coding upstream 1210463 30278255 ~ 30284238 (-)
chd2 LOC106573776 coding upstream 1235827 30303619 ~ 30336415 (-)
LOC110520865 NA coding upstream 1278963 30346755 ~ 30352648 (-)
G29711 NA non-coding downstream 3884 29061582 ~ 29061782 (-)
G29709 NA non-coding downstream 5002 29060460 ~ 29060664 (-)
G29701 NA non-coding downstream 16504 29048718 ~ 29049162 (-)
G29700 LOC106573762 non-coding downstream 18313 29047121 ~ 29047353 (-)
G29699 LOC106573762 non-coding downstream 19807 29045592 ~ 29045859 (-)
G29728 NA non-coding upstream 34169 29101961 ~ 29102212 (-)
G29730 NA non-coding upstream 35577 29103369 ~ 29103596 (-)
G29755 NA non-coding upstream 69002 29136794 ~ 29137052 (-)
G29772 NA non-coding upstream 81731 29149523 ~ 29149788 (-)
G29805 NA non-coding upstream 105212 29173004 ~ 29173255 (-)
G29355 NA other downstream 361310 28703887 ~ 28704356 (-)
G28870 NA other downstream 999361 28057443 ~ 28066305 (-)
LOC110520292 gnao1 other downstream 1422546 27631001 ~ 27781768 (-)
G25117 zfpm1 other downstream 3783648 25281604 ~ 25282018 (-)
G25115 zfpm1 other downstream 3784636 25280592 ~ 25281030 (-)
G29906 mef2a other upstream 212484 29280276 ~ 29280700 (-)
LOC110520932 LOC106573529 other upstream 2064101 31131151 ~ 31132900 (-)
LOC110521048 LOC100194695 other upstream 2358331 31426123 ~ 31444964 (-)
G33386 NA other upstream 2916979 31984771 ~ 31989249 (-)
G35075 LOC106573452 other upstream 4039327 33107119 ~ 33108497 (-)

Expression


Co-expression Network