G31045


Basic Information

Item Value
gene id G31045
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 30082180 ~ 30083430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU35334
tttatctcagctcatgaaacatgggaccaacactttacatgttgcgtttatttttgttcagtgtatgttcaGTAGTagaaatttgcttaacaagtcacaatacGTTGCATAAACTCGAtgtgtgcaatagtgtttaacactttttttaaatgactacctcatcgctGTACCCCACAAATACAAGTGTCTGtatggtccctcagtcgagcattgAATTTCAGACAgattctgtctgtgtctgtctctctctctctcacacacacagaggaggttttccaatgcctcgcaaagaaaacAAACATCTCTATAAAATGGCACTACATTTGGACATGAAGACTAACAAACACACATATTTTACAATCTGTTCAGAATGTTTAAGCAAGTCCGAAACTGAATATCCATATTCAATTGCAGTTGTAAGGTTGTCACAGAGCAAACGTGTTAAAATGTTTTCAAAATAATTAGCAAAGAAGAAAGAACCGTTGACTGGATAAGTCAGACATCTAATAAGGCACACATCGGAAACCATGAAGTCCAATGTCTGTGGTAAAACACATCCATACTACAACTTCAATCTTTTGTAAAGAAATGTTACACAACAACACTTCTTTGATGACCTTTAAGCAGAACACTGGTTTGGTTCTTAAATTGACGTTAAGCATGAAGTCCATAGACATTCTTTCCCTGAACTATGTGTTTGGTTCGTTCAGACTGAGGGACATTTTCCTGGCTGCTAAAAGTGTTCCTAGGGCTTTCTGTGCCGAGGACTGTCCCTGAGCTGTTTGAGGTCGCTACAGCAGCAGGCACTCCAGTGTCTTGTGTTTTGATATAAACAACATAAAAGACAGGCAGGATAATGCCTATCAGGAGCATGGCCACCACAGCGTTCCACCACTGGATGCCCCAGTCTGCTCCATAGCTGGTCAAGCGCTGGCCTCTGTAGCCCAAAATTTGTGGCCGCTCTGTGGCCTCTAAAAAGACCTCATTCTGTGCATCTGTGATTTGAATCAGTCTCTCGATGTCATGATCCACTTCCTTGAGGAAGTCAGTGTATTCCTGTAAATGTGGCCTACCAGATGAGCTGGCTGTAGGTCTGTCCTGTGGTGTGGATGAATTTgaggttctgtgttctgtgttagTCAATAAGCTGTGTTTCTTCACAGGGATTTTGATTGATTTCAATGCAAACATATCCTGTTCCTGAATCAGGTTGTTCACCCTCTTTATGT

Function

NR:

description
lysM and putative peptidoglycan-binding domain-containing protein 4-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU35334 True 1229 lncRNA 0.41 2 30082180 30083430

Neighbor

gene id symbol gene type direction distance location
nr2f2 LOC106573769 coding downstream 409189 29662948 ~ 29672991 (-)
LOC118946030 NA coding downstream 701455 29371933 ~ 29380725 (-)
LOC110532163 NA coding downstream 1199549 28862981 ~ 28882631 (-)
LOC110520608 LOC106573759 coding downstream 1239530 28835278 ~ 28842650 (-)
LOC110520584 LOC106573758 coding downstream 1251233 28794166 ~ 28830947 (-)
LOC118964375 NA coding upstream 194825 30278255 ~ 30284238 (-)
chd2 LOC106573776 coding upstream 220189 30303619 ~ 30336415 (-)
LOC110520865 NA coding upstream 263325 30346755 ~ 30352648 (-)
st8sia2 LOC100135855 coding upstream 289846 30373276 ~ 30400646 (-)
slco3a1 LOC106561149 coding upstream 330651 30414081 ~ 30461343 (-)
G31018 NA non-coding downstream 46780 30035086 ~ 30035400 (-)
G31016 NA non-coding downstream 48968 30032411 ~ 30033212 (-)
G31011 NA non-coding downstream 54696 30027180 ~ 30027484 (-)
G31005 NA non-coding downstream 61890 30020087 ~ 30020290 (-)
G30980 NA non-coding downstream 112105 29969865 ~ 29970075 (-)
G31192 NA non-coding upstream 114493 30197923 ~ 30198150 (-)
G31386 NA non-coding upstream 126556 30209986 ~ 30210219 (-)
G31451 NA non-coding upstream 260475 30343905 ~ 30344480 (-)
G31374 NA non-coding upstream 319871 30403301 ~ 30404602 (-)
G29906 mef2a other downstream 801480 29280276 ~ 29280700 (-)
G29355 NA other downstream 1377824 28703887 ~ 28704356 (-)
G28870 NA other downstream 2015875 28057443 ~ 28066305 (-)
LOC110520292 gnao1 other downstream 2439060 27631001 ~ 27781768 (-)
G25117 zfpm1 other downstream 4800162 25281604 ~ 25282018 (-)
LOC110520932 LOC106573529 other upstream 1048463 31131151 ~ 31132900 (-)
LOC110521048 LOC100194695 other upstream 1342693 31426123 ~ 31444964 (-)
G33386 NA other upstream 1901341 31984771 ~ 31989249 (-)
G35075 LOC106573452 other upstream 3023689 33107119 ~ 33108497 (-)
G35299 NA other upstream 3358938 33442368 ~ 33452413 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007871 NA coding CM030123.1 CM030123.1 35320619 ~ 35323890 (+)
mexican tetra (Astyanax mexicanus) G159733 NA non-coding NC_035914.1 CM008317.1 20750649 ~ 20752677 (-)