G33025


Basic Information

Item Value
gene id G33025
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 31557866 ~ 31559782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU37432
TTACATCATGAGAAATAATTAAGTGATTTTTTTCAAGATAAACCGCCTCTACCATCTGTTCCACTGGTTAATGTACGATCACTGGAGAACAAATTGGACAAGCTCCATTCCAGACTATTCTATCAACGAGACCTAAAGAACagtaatatcctatgcttcagAGTCATGGCTCAAGAGTCAAACTCAAGGGCGggggtgtgtctctttgttaacaacagtttgtgcgcaatctctaatattaagaaAGACTCGAGGTTCTGCTCGcctgataagctgtagaccacactatttacaaaGAGAGACGtaatctatattttttgtagctgtctatttaccacaacaaaccgatgctggcactaagacataACGAACTATACAGGGCCATAAgccaacaagaaaatgctcatccagaggcagcgctcctcgTGGCTGGTGATTTTAAAAATCCGTTTTACCCCATTTCAACCAGcttgtcacctgtgcaactagtgGGGAAAAAAACCAAAAAACTCTAGGTCACCTTTACTCCTCACACAGAggcgcatacaaagctctccttcaCCCTTCATTTGGCAattctgaccataactctatcctcctgattcctgcttacaagcaaaaactcaaacaggaagtaccagtgacacgctcaattaggaagtggtccgatgaagcagatgctaagctacaggactgtttatattccgggattcatcctctggcattgaggagtttaccacatcaatgacaggcttcattaataagtgcatcaacaacgttgcccccacagtgaccatacgtacatatcccaaccagaagccatggattataggcagcatccacactgagctaaaggatagaaCTGCCGCTTTcgaggagcgggacactaacctGGATGCTTATAAGAAGTCCCGCTACGTCccccgatgaaccatcaaacaggcaaagcatcaatacaggactaagatcgaatcatagtACACCGGCTCAtgcactcgtcggatgtggcagggcttgcaaactatcatggattacaaagggaaacccagctaaCGGCTGCcctgtgacacgagcctaccagacgagttacatgccttttatgctcacttcgaggcgagcaacactgaaccatgtgtgagccagacggattaccaggacacatactcagagcatgcacaggccagctggcaagtgtcttcactgacatttttaacctctcactgacccagtctgtaatacctacagtacatgtttcaagcagaccaccatagtccctgtggccaagaacgccaaggtaaatgactatcaccccgtagcactcacacctgtagccatgaaatgctttgaaaggctggtcatggctcacatcaacaccatcatcccagaccccctggacccactccaattcgcataccgccccaacaaatcCAGAGAGAACGCAATCTTGATTGCAGTCCACACCTCCCTTTCCCACTtctacaaaaggaacacctacgtgagaatgctgttcattgactacagctcaacaccatagatccctccaagctcatcactaagctaaggtccctgggactgaacacctccctctgcaactggatcccagGTGGTCAGGGTAGGCAATAACACATacaccacgctgaccctcaacacgggagcccctcaggggtgcgtgcttagtcccctcctgtactcacagttcacccacgactgcgtggccacacactacgacaacaccatcattaagtttgctgacaacacgacggtggtaggcctgatcaccgacaacggtggtgggtgcaactcaacattaggaaggtgttcctaatgtttggtatgctcAGTGCATGTAAAGtacctacctcaattacctcgtacccctgcacatcaaatCAGCACTGGTACTCCCTctttagccat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37432 True 1917 lncRNA 0.38 1 31557866 31559782

Neighbor

gene id symbol gene type direction distance location
LOC110521059 scaper coding downstream 8578 31461269 ~ 31549288 (-)
LOC110521048 LOC100194695 coding downstream 112902 31426123 ~ 31444964 (-)
LOC110520932 LOC106573529 coding downstream 424966 31131151 ~ 31132900 (-)
LOC110520931 LOC106573506 coding downstream 576141 30713838 ~ 30981725 (-)
plin1 plin1 coding downstream 1008429 30517419 ~ 30549437 (-)
tspan3a tspan3 coding upstream 6592 31566374 ~ 31582335 (-)
LOC110521155 LOC106573493 coding upstream 41606 31601388 ~ 31609175 (-)
LOC110521169 LOC106573492 coding upstream 54394 31614176 ~ 31638698 (-)
LOC110532195 NA coding upstream 231597 31791379 ~ 31794152 (-)
LOC110521239 LOC106573487 coding upstream 249130 31808912 ~ 31842003 (-)
G32952 NA non-coding downstream 213414 31344251 ~ 31344452 (-)
G32875 NA non-coding downstream 338092 31218104 ~ 31219774 (-)
G32298 NA non-coding downstream 469871 31087694 ~ 31087995 (-)
G32209 NA non-coding downstream 532724 31024799 ~ 31025142 (-)
G33021 NA non-coding upstream 2934 31562716 ~ 31563263 (-)
G33023 NA non-coding upstream 18662 31578444 ~ 31600483 (-)
G33104 NA non-coding upstream 52160 31611942 ~ 31613064 (-)
G33109 NA non-coding upstream 57339 31617121 ~ 31682005 (-)
G33212 NA non-coding upstream 217383 31777165 ~ 31782159 (-)
G29906 mef2a other downstream 2277166 29280276 ~ 29280700 (-)
G29355 NA other downstream 2853510 28703887 ~ 28704356 (-)
G28870 NA other downstream 3491561 28057443 ~ 28066305 (-)
G33386 NA other upstream 424989 31984771 ~ 31989249 (-)
G35075 LOC106573452 other upstream 1547337 33107119 ~ 33108497 (-)
G35299 NA other upstream 1882586 33442368 ~ 33452413 (-)
G35628 NA other upstream 2307776 33867558 ~ 33868045 (-)
G36141 NA other upstream 2717918 34277700 ~ 34362736 (-)

Expression


Co-expression Network